View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_82 (Length: 303)

Name: NF1532_low_82
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_82
NF1532_low_82
[»] chr1 (1 HSPs)
chr1 (31-293)||(12571975-12572237)
[»] chr2 (4 HSPs)
chr2 (67-297)||(20019954-20020175)
chr2 (83-293)||(20029955-20030158)
chr2 (165-297)||(20000786-20000913)
chr2 (179-297)||(20010535-20010648)
[»] chr8 (2 HSPs)
chr8 (67-297)||(35039327-35039546)
chr8 (233-296)||(35038818-35038881)
[»] chr4 (1 HSPs)
chr4 (67-297)||(48301284-48301511)
[»] scaffold0117 (1 HSPs)
scaffold0117 (172-297)||(16497-16623)
[»] chr6 (1 HSPs)
chr6 (71-121)||(912438-912488)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 31 - 293
Target Start/End: Original strand, 12571975 - 12572237
Alignment:
Q  31 ttatggtcataattgtacattatcttgctgttttggttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12571975 ttatggtcataattgtacattatcttgctgttttggttcaggaagctactggattcacaagtttctcgagcttgatgaggaaggaagaatccactccgtt 12572074  T
Q  131 tggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12572075 tggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttat 12572174  T
Q  231 atctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12572175 atctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatg 12572237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 20020175 - 20019954
Alignment:
Q  67 ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga 166  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||| |||||||   ||    
T  20020175 ttcaggaagct-cgggattcacaagtttcacgagcttgatggggaagaaagaatccattccatttggcagagcttacaatttcttggtgcctcaa---ga 20020080  T
Q  167 tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctc 266  Q
    |||||||||||||||||||| |  |||||| ||||||| |||| |||||      ||||||| || |||||||  ||||||||| |||||||||||||||    
T  20020079 tgtcagtaaatcatgttatgaccgtcttaactaattttgtttacgtgca-----gtctgcttttagctgatataatctattttaatttgatttttctctc 20019985  T
Q  267 taacagcaaactccaaacaaacctatgctac 297  Q
    |||||||||||||||||||| ||||||||||    
T  20019984 taacagcaaactccaaacaaccctatgctac 20019954  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 293
Target Start/End: Complemental strand, 20030158 - 20029955
Alignment:
Q  83 attcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgt 182  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||  |||||| |||   ||||||||||||||||||    
T  20030158 attcacaagtttctcgagcttaatggggaagaaagaatccaatccatttggcagaccttacaatttctcggcgccgcaa---gatgtcagtaaatcatgt 20030062  T
Q  183 tatggctatcttaattaatttt-ctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctctaacagcaaactcca 281  Q
     |    | |||||| ||||||| |||||||||||     | ||||||||| |||||||| | |||||||||||||||||||| |||| ||||||||||||    
T  20030061 aaaccatgtcttaactaattttcctttatgtgca-----aactgcttatagctgatatgatatattttactttgatttttctttctagcagcaaactcca 20029967  T
Q  282 aacaaacctatg 293  Q
    ||||||||||||    
T  20029966 aacaaacctatg 20029955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 20000913 - 20000786
Alignment:
Q  165 gatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctc 264  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||| | |     || |||||| |||||||| |||||||| ||||||||||||||    
T  20000913 gatgtcagtaaatcatgttatggcagtcttaattaattttccttatgtgaagt-----cttcttatagctgatatgatctatttttctttgatttttctc 20000819  T
Q  265 tctaacagcaaactccaaacaaacctatgctac 297  Q
    |||| ||||||||||||||||||||||||||||    
T  20000818 tctagcagcaaactccaaacaaacctatgctac 20000786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 20010648 - 20010535
Alignment:
Q  179 atgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctctaacagcaaact 278  Q
    |||||||| || |||||| ||||||| ||||||||||    || ||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||    
T  20010648 atgttatgtctgtcttaactaattttatttatgtgca----ga-ctgctcatagctgatatgatctattttactttgatttttctctctaacaacgaact 20010554  T
Q  279 ccaaacaaacctatgctac 297  Q
     |||||||| || ||||||    
T  20010553 tcaaacaaagctctgctac 20010535  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 297
Target Start/End: Original strand, 35039327 - 35039546
Alignment:
Q  67 ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga 166  Q
    |||||||||||||  ||| |||||| ||||| ||||| |||| |||| ||||||||| ||| ||| ||||||||||||||| | ||| | |||||   ||    
T  35039327 ttcaggaagctacgagatgcacaagcttctcaagcttaatggagaagaaagaatccaatccatttcgcagaccttacaattccttggtgtctcaa---ga 35039423  T
Q  167 tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatg--ctctattttactttgatttttctc 264  Q
    | ||||||||||||||||||||| | ||      |||| ||||||     |||  |||||||||| || |||||  || | ||||||||||  |||||||    
T  35039424 tatcagtaaatcatgttatggctgtgtt-----gttttatttatg-----tgtcgtctgcttatagctcatatgatcttttttttactttgccttttctc 35039513  T
Q  265 tctaacagcaaactccaaacaaacctatgctac 297  Q
    |||| |||||||| |||||||||||||||||||    
T  35039514 tctatcagcaaaccccaaacaaacctatgctac 35039546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 35038881 - 35038818
Alignment:
Q  233 ctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatgcta 296  Q
    |||||||| ||| |||||||||||||||||||  ||  ||||||||||||||||||||||||||    
T  35038881 ctgatatgatcttttttactttgatttttctcaataggagcaaactccaaacaaacctatgcta 35038818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 48301511 - 48301284
Alignment:
Q  67 ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga 166  Q
    ||||||||||||| |||||  |||||||||| || |||||| |||| ||||||| |  ||| | ||| ||||||||| ||||  |   ||||||||||      
T  48301511 ttcaggaagctactggattatcaagtttctcaagtttgatgaggaaagaagaattcgatccatctggaagaccttactattttgttctgcctcaagat-- 48301414  T
Q  167 tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtg-atctgcttatatctgatatgctctattttactttgatttttctct 265  Q
    ||||||||||||||||||| |||||||||| ||||||||  | || ||| | ||  | |  | ||| || ||||||||||||||| ||| |||||||| |    
T  48301413 tgtcagtaaatcatgttattgctatcttaactaattttc--tctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttcttt 48301316  T
Q  266 ctaacagcaaactccaaacaaacctatgctac 297  Q
    ||| || ||||||||| |||| ||||||||||    
T  48301315 ctagcaacaaactccatacaatcctatgctac 48301284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 16623 - 16497
Alignment:
Q  172 gtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatc-tgcttatatctgatatgctctattttactttgatttttctctctaac 270  Q
    ||||||||||||||| ||||||||| ||| ||||| |||||||| | || |  |  ||||| || ||| | ||| ||||   ||||||||||| ||||||    
T  16623 gtaaatcatgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttctttctaac 16524  T
Q  271 agcaaactccaaacaaacctatgctac 297  Q
    |||||| ||||||||| ||||||||||    
T  16523 agcaaattccaaacaatcctatgctac 16497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 912488 - 912438
Alignment:
Q  71 ggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatc 121  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  912488 ggaagctattggattcacaagtttcttgagcttgatggggaaagaagaatc 912438  T

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