View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_88 (Length: 287)
Name: NF1532_low_88
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_88 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 32183741 - 32183544
Alignment:
| Q |
44 |
ccataaccctgtaaataaaacatagcaaactctgcagtcaatgaacggacacatgatttttagtaatgaagttcggtcaattgtgcctacatctaacggc |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183741 |
ccataaccctgtaaattaaacatagcaaactctgcagtcaatgaatggacacatgatttttagtaatgaagttcggtcaattgtgcctacatctaacggc |
32183642 |
T |
|
| Q |
144 |
agagtggcagcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacatatacaacggtctagattagaacatttcctatga |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32183641 |
agagtggctgcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttac--atacaacggtctagattagaacatttcctatga |
32183544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 33635744 - 33635785
Alignment:
| Q |
44 |
ccataaccctgtaaataaaacatagcaaactctgcagtcaat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33635744 |
ccataaccctgtaaataaaacatagcaaaatctgcagtcaat |
33635785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 39260543 - 39260625
Alignment:
| Q |
144 |
agagtggcagcagttcttttctattattttaagcttaaggtttacgatgtacaacttgtatttacatatacaacggtctagatta |
228 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| |||||||||||| |||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
39260543 |
agagtggttgcagttcctttgtattattttaaacttaaggtttacattgtataacttgtatttaaatat--tacggtctagatta |
39260625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University