View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_89 (Length: 286)
Name: NF1532_low_89
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 276
Target Start/End: Complemental strand, 40994919 - 40994671
Alignment:
| Q |
28 |
caaaatcttcataactttgttgcactcaaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacga |
127 |
Q |
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| T |
40994919 |
caaaatcttcataactttgttgcactcaaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacga |
40994820 |
T |
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| Q |
128 |
ttgataatttgagtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgc |
227 |
Q |
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| T |
40994819 |
ttgataatttgagtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgc |
40994720 |
T |
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| Q |
228 |
tgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattct |
276 |
Q |
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| T |
40994719 |
tgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattct |
40994671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 40987094 - 40986854
Alignment:
| Q |
39 |
taactttgttgcactcaaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacgattgataatttg |
138 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||| || || |||||||||| |||||||||||||| | || ||||| |||||| |
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| T |
40987094 |
taactttggtgcactcaaagacgtttctttgggttggattgaagttcccatgaatactctcaaaacgttgttatcaacttgcaagactattgagaatttg |
40986995 |
T |
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| Q |
139 |
agtcttgagaaatgtttgaatttggcaaactttgatttgggaga---tgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatt |
235 |
Q |
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| T |
40986994 |
agtttgaagaggtgttggaatttggtggactttgatttaaaagatattgtacaacttgggttaaaaagaatggtgctaaacaagtgtgatacacagtgta |
40986895 |
T |
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| Q |
236 |
tcatatttaatgcaccaaatcttaaatacttcaaatattct |
276 |
Q |
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| T |
40986894 |
tcaaattagatgcaccaaatcttaaattcttcaagtattct |
40986854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 31463033 - 31462895
Alignment:
| Q |
39 |
taactttgttgcactcaaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacgattgataatttg |
138 |
Q |
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|||||||| |||||||||| | | ||||||||||||||||||||| | ||| | |||||||||| |||||||||||||||| || ||||| | |||| |
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| T |
31463033 |
taactttggtgcactcaaaaacgtttctttgggttggattgaagttcacatcgatactctcaaaactttgttatcaacttgtaagactattgagagtttg |
31462934 |
T |
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| Q |
139 |
agtcttgagaaatgtttgaatttggcaaactttgatttg |
177 |
Q |
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| T |
31462933 |
agtcttaagaggtgttggaatttagtggactttgatttg |
31462895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 39 - 276
Target Start/End: Original strand, 21179896 - 21180133
Alignment:
| Q |
39 |
taactttgttgcactcaaagatttgtctttgggttggattgaagttgaaatcaaaactctcaaaaaattgttatcaacttgtagaacgattgataatttg |
138 |
Q |
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|||||||| |||||||||||| || ||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||| |||||||| | |||| |
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| T |
21179896 |
taactttggtgcactcaaagacttatctttgggttggattgaagttaaaatcaaaaccctaaaaaaattgttatcaatttgtaggacgattgaaagtttg |
21179995 |
T |
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| Q |
139 |
agtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttca |
238 |
Q |
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| T |
21179996 |
aatcttaagaaatgctggaatttggcgaactttgatttgggagatgaaccacttggattaacaagattggtggtaaacaagtgtgattctgagtatttca |
21180095 |
T |
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| Q |
239 |
tatttaatgcaccaaatcttaaatacttcaaatattct |
276 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
21180096 |
tatttaatgcaccaaatctgaaatacttcaaatattct |
21180133 |
T |
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