View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_9 (Length: 662)
Name: NF1532_low_9
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 30 - 636
Target Start/End: Original strand, 43540099 - 43540690
Alignment:
| Q |
30 |
ttaacaataagaggaaagatcttttgcagaagtacatccagctgagcactgaagccaaggtaattaaagtatatgatgatatcaacaaaaactataatcc |
129 |
Q |
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| T |
43540099 |
ttaacaataagaggaaagatcttttgcagaagtacatccagctgagcactgaagccaaggtaattaaagtatatgatgatatcaacaaaaactataatcc |
43540198 |
T |
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| Q |
130 |
aaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgattctagagagcaaggacaaaggaaaagccattctggatctcatctctattct |
229 |
Q |
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| T |
43540199 |
aaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgattctagagagcaaggacaaaggaaaagccattctggatctcatctctattct |
43540298 |
T |
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| Q |
230 |
taacataaccaaccttgtattgggagtcaaaaagctacggtatataatatatgctactacaactcaattagtgacaatattgtcagtaacatgcatggtt |
329 |
Q |
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| T |
43540299 |
taacataaccaaccttgtattgggagtcaaaaagctacggtata---------------caactcaattagtgacaatattgtcactaacatgcatggtt |
43540383 |
T |
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| Q |
330 |
aaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaatgataaattaagggaaggagagtttgtgaagaaa |
429 |
Q |
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| T |
43540384 |
aaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaatgataaattaagggaaggagagtttgtgaagaaa |
43540483 |
T |
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| Q |
430 |
aatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtttgtgtatgagattgatgcttttatggatgaatgccaatcacaaagtaaat |
529 |
Q |
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| T |
43540484 |
aatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtttgtgtatgagattgatgcttttatggatgaatgccaatcacaaagtaaat |
43540583 |
T |
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| Q |
530 |
atcactcaaaatgcaacttctttcatcagtgtatttgcttttcaggcaagtcaagttaattatggctttctttaaattaatatcatagcatagcatgtat |
629 |
Q |
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| T |
43540584 |
atcactcaaaatgcaacttctttcatcagtgtatttgcttttcaggcaagtcaagttaattatggctttctttaaattaatatcatagcatagcaggtat |
43540683 |
T |
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