View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_94 (Length: 283)
Name: NF1532_low_94
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 39082489 - 39082236
Alignment:
| Q |
1 |
gaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatt |
100 |
Q |
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| T |
39082489 |
gaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatt |
39082390 |
T |
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| Q |
101 |
tgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtca |
200 |
Q |
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| T |
39082389 |
tgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatggttaggagagtca |
39082290 |
T |
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| Q |
201 |
ctcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaatt |
254 |
Q |
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| T |
39082289 |
ctcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaatt |
39082236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 31727126 - 31726939
Alignment:
| Q |
1 |
gaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
31727126 |
gaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatgaaaccatcaaaacaatt |
31727027 |
T |
|
| Q |
101 |
tgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacgatgg |
188 |
Q |
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| T |
31727026 |
tgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttctttcctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 39076032 - 39075959
Alignment:
| Q |
9 |
agcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaat |
82 |
Q |
| |
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|||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| |
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| T |
39076032 |
agcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 7593351 - 7593472
Alignment:
| Q |
9 |
agcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaagg |
108 |
Q |
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||||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| ||| |||||| ||||| | |
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| T |
7593351 |
agcataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaag |
7593450 |
T |
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| Q |
109 |
aacaatgatccacccaaatatg |
130 |
Q |
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|||||||||| | ||||||||| |
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| T |
7593451 |
aacaatgatcaatccaaatatg |
7593472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 43131466 - 43131344
Alignment:
| Q |
9 |
agcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaagg |
108 |
Q |
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||||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| ||| || ||||| | |
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| T |
43131466 |
agcataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaag |
43131367 |
T |
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| Q |
109 |
aacaatgatccacccaaatatga |
131 |
Q |
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|||||||||||||||||| |||| |
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| T |
43131366 |
aacaatgatccacccaaacatga |
43131344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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