View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_96 (Length: 277)
Name: NF1532_low_96
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_96 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 1134535 - 1134782
Alignment:
| Q |
30 |
actaatggggacctctaagttacatgccaaagtactttagcatttctttcaatttgtttgtttcccatgtaagtcccttaagtttcaaaacatttacacc |
129 |
Q |
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| T |
1134535 |
actaatgtggacctctaagttacatgccaaagtactttagcatttctttcaatttgtttgtttcccatgtaagtcccttaagtttcaaaacatttacacc |
1134634 |
T |
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| Q |
130 |
attgatattcttgagttttcattaaaatcctatgtggcttgtggaggtttttgacctgtataatcttcaaccaagaaaacctagagaattctttcctcct |
229 |
Q |
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| T |
1134635 |
attgatattcatgagtttttattaaaatcctatgtgtcttgtggaggtttttgacctgtataatcttcaaccaagaaaacctagagaattctttcctcct |
1134734 |
T |
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| Q |
230 |
aatcaaaaactttctttttattcctttctaattttaacttgaaacttc |
277 |
Q |
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| T |
1134735 |
aatcaaaaactttctttttattcctttctaattttaacttgaaacttc |
1134782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 44630222 - 44630175
Alignment:
| Q |
228 |
ctaatcaaaaactttctttttattcctttctaattttaacttgaaacttc |
277 |
Q |
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| T |
44630222 |
ctaatcaaaaacttt-tttttattccttttta-ttttaacttgaaacttc |
44630175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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