View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15330_high_4 (Length: 323)
Name: NF15330_high_4
Description: NF15330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15330_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34917184 - 34916875
Alignment:
| Q |
1 |
tcatctagtagagaatcaatactacacccattttgaaacaaattctcatcgaaagaaaaatccgggacatcatcaaaatcacaagttggtaccaaacact |
100 |
Q |
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| T |
34917184 |
tcatctagtagagaatcaatactacacccattttgaaacaaattctcatcgaaagaaaaatccgggacatcatcaaaatcacaagttggtaccaaacact |
34917085 |
T |
|
| Q |
101 |
gatcattgggaaaaaattgttcagtttgttgggactgagaggatattgttgtgcttctgttggttttgttctttatagcattagctgaaggttttcttct |
200 |
Q |
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| T |
34917084 |
gatcattgggaaaaaattgttcagtttgttgagactgagaggatattgttgtgcttctgttggttttgttttttatagcattagctgaaggttttcttct |
34916985 |
T |
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| Q |
201 |
ataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagttcctttagggtactttgatctaccctttattttggagtat |
300 |
Q |
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| T |
34916984 |
ataatctttcggaggattttcgtctaggtttaagctcttgatatatttttgtagaagagttcctttagggtactttgatctaccctttcttttggagtat |
34916885 |
T |
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| Q |
301 |
tgtcttctct |
310 |
Q |
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|||||||||| |
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| T |
34916884 |
tgtcttctct |
34916875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21549318 - 21549371
Alignment:
| Q |
1 |
tcatctagtagagaatcaatactacacccattttgaaacaaattctcatcgaaa |
54 |
Q |
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| T |
21549318 |
tcatctagcagagaatcaatactacacccatcttgaaacaaattatcatcgaaa |
21549371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 21549495 - 21549574
Alignment:
| Q |
181 |
ttagctgaaggttttcttctataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagt |
260 |
Q |
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|||| ||||| ||||||| |||| ||||| || || |||| ||||| ||| |||||||||||||||| |||||||||||| |
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| T |
21549495 |
ttagttgaagattttcttgtatactcttttgggggatttttgtctaagttcaagctcttgatatattcttgtagaagagt |
21549574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43866870 - 43866809
Alignment:
| Q |
1 |
tcatctagtagagaatcaatactacacccattttgaaacaaattctcatcgaaagaaaaatc |
62 |
Q |
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|||||||| ||||||||||||| |||||| | || ||||||||| ||||| ||||||||||| |
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| T |
43866870 |
tcatctagcagagaatcaataccacacccttcttcaaacaaattatcatccaaagaaaaatc |
43866809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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