View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15330_low_1 (Length: 348)

Name: NF15330_low_1
Description: NF15330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15330_low_1
NF15330_low_1
[»] scaffold0003 (2 HSPs)
scaffold0003 (111-338)||(41944-42171)
scaffold0003 (111-338)||(35274-35501)
[»] chr6 (4 HSPs)
chr6 (111-338)||(27445187-27445414)
chr6 (120-338)||(20909590-20909808)
chr6 (120-338)||(20924038-20924256)
chr6 (281-338)||(22081881-22081938)
[»] chr8 (2 HSPs)
chr8 (120-338)||(42312704-42312922)
chr8 (285-338)||(43227254-43227307)
[»] chr4 (3 HSPs)
chr4 (16-112)||(37618466-37618559)
chr4 (285-322)||(30180301-30180338)
chr4 (281-338)||(37618034-37618091)
[»] chr1 (1 HSPs)
chr1 (120-338)||(41326488-41326702)
[»] chr7 (2 HSPs)
chr7 (120-338)||(11504544-11504770)
chr7 (224-338)||(18939752-18939865)


Alignment Details
Target: scaffold0003 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 111 - 338
Target Start/End: Original strand, 41944 - 42171
Alignment:
Q  111 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 210  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  41944 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg 42043  T
Q  211 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 310  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  42044 atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 42143  T
Q  311 gattctaaaactattgcttcatcctatg 338  Q
    ||||||||||||||||||||||||||||    
T  42144 gattctaaaactattgcttcatcctatg 42171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 111 - 338
Target Start/End: Original strand, 35274 - 35501
Alignment:
Q  111 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 210  Q
    |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||     
T  35274 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcg 35373  T
Q  211 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 310  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  35374 atcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 35473  T
Q  311 gattctaaaactattgcttcatcctatg 338  Q
    ||||||||||||||||||||||||||||    
T  35474 gattctaaaactattgcttcatcctatg 35501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 111 - 338
Target Start/End: Complemental strand, 27445414 - 27445187
Alignment:
Q  111 aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc 210  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  27445414 aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg 27445315  T
Q  211 atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 310  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  27445314 atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt 27445215  T
Q  311 gattctaaaactattgcttcatcctatg 338  Q
    ||||||||||||||||||||||||||||    
T  27445214 gattctaaaactattgcttcatcctatg 27445187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 120 - 338
Target Start/End: Original strand, 20909590 - 20909808
Alignment:
Q  120 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 218  Q
    ||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| ||||  ||||||||    
T  20909590 aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga 20909688  T
Q  219 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 318  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| |  ||| ||| ||||||||||| ||||||| ||||||||||    
T  20909689 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa 20909788  T
Q  319 aactattgcttcatcctatg 338  Q
    |||| |||||||||| ||||    
T  20909789 aactcttgcttcatcatatg 20909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 120 - 338
Target Start/End: Original strand, 20924038 - 20924256
Alignment:
Q  120 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 218  Q
    ||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| ||||  ||||||||    
T  20924038 aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga 20924136  T
Q  219 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 318  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| |  ||| ||| ||||||||||| ||||||| ||||||||||    
T  20924137 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa 20924236  T
Q  319 aactattgcttcatcctatg 338  Q
    |||| |||||||||| ||||    
T  20924237 aactcttgcttcatcatatg 20924256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 22081938 - 22081881
Alignment:
Q  281 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 338  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | ||||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctatg 22081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 338
Target Start/End: Original strand, 42312704 - 42312922
Alignment:
Q  120 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 218  Q
    ||||||||||| |||||||||| ||  |||| |||||||||| ||||| ||| || ||||||||||| ||| | | | ||||||| ||||  ||||||||    
T  42312704 aattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaagat-gcagatttaactatacatatataaggaaaataattaatcataga 42312802  T
Q  219 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 318  Q
    || | |||||||||||||| |||||||   |||||| |||||||||| |||| | |||||  ||| ||| ||||||||||| ||||||| ||||||||||    
T  42312803 atatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaa 42312902  T
Q  319 aactattgcttcatcctatg 338  Q
     ||| |||||||||| ||||    
T  42312903 tactcttgcttcatcgtatg 42312922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 43227307 - 43227254
Alignment:
Q  285 agatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 338  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  43227307 agatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatg 43227254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 37618466 - 37618559
Alignment:
Q  16 cacatagcccaaataatccttaaccaaatacagatgtgcacagaggaggaatctgattacagcgatgaaccactacgaatccagagaacctggtgaa 112  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||   | ||||||||||||||| |||||||||||||||||||||||||||||    
T  37618466 cacatagcccaaataatccttaaccaaacacagatgtgcaccgagga---acctgattacagcgatgtaccactacgaatccagagaacctggtgaa 37618559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  285 agatatcttcctgtcaaacaacatttgattctaaaact 322  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 37618034 - 37618091
Alignment:
Q  281 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatg 338  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | ||||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctatg 37618091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 338
Target Start/End: Original strand, 41326488 - 41326702
Alignment:
Q  120 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga 218  Q
    ||||||||||| ||||||||||   |||||| |||||||||| ||||| ||| || ||||||||  | ||| | | | ||||||| ||||  ||||||||    
T  41326488 aattcttattgtgcataggagc---aatgatgttttggaatcatcaaataaagat-gcagatttt-ctatacatatataaggaaaataattaatcataga 41326582  T
Q  219 atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa 318  Q
    || | |||||||||||||||||||||| | |||||| |||||||||| |||| | |||||  ||| ||| ||||||||||| ||||| | ||||||||||    
T  41326583 atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaa 41326682  T
Q  319 aactattgcttcatcctatg 338  Q
    |||| |||||||||| ||||    
T  41326683 aactcttgcttcatcatatg 41326702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 338
Target Start/End: Complemental strand, 11504770 - 11504544
Alignment:
Q  120 aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaa-agaaggaaataatccatcataga 218  Q
    ||||||||||| |||||||||  || || || |||| ||||| ||||| | | |||||||||||||| ||||| || | |||||||||||  |||| |||    
T  11504770 aattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaactataaaaaatataaggaaataattaatca-aga 11504672  T
Q  219 atctaataaagtaatataacataacaacaga--------cacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt 310  Q
    || | |||||||||| ||||||||||| | |        | ||| |||||||||| |||| | |||||  |||||||||||||| |||||||||||| ||    
T  11504671 atatgataaagtaatctaacataacaataaaacaataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacactt 11504572  T
Q  311 gattctaaaactattgcttcatcctatg 338  Q
    |||||||||||| |||||||||| ||||    
T  11504571 gattctaaaactcttgcttcatcatatg 11504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 18939752 - 18939865
Alignment:
Q  224 ataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaacta 323  Q
    |||||||| | ||||||||||| | ||||||  ||||||| | |||| | ||||| |  ||||||||||||||  ||||||||| ||||||||||||||     
T  18939752 ataaagtattctaacataacaataaacacagttgcatcaattaagacgtcttcgatat-aaagatatcttccttccaaacaacacttgattctaaaactc 18939850  T
Q  324 ttgcttcatcctatg 338  Q
    ||| |||||| ||||    
T  18939851 ttgattcatcatatg 18939865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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