View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15332_low_1 (Length: 409)
Name: NF15332_low_1
Description: NF15332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15332_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 55 - 389
Target Start/End: Complemental strand, 55202834 - 55202498
Alignment:
| Q |
55 |
ttagttctacacctaatgcaattaaagttgctgctactacttattgtcagttattactttcttccaagagtgataacaatgtgaaa--ctcattgtgctt |
152 |
Q |
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| T |
55202834 |
ttagttctacacctaatgcaattaaagttactgccactacttattgtcagttattactttcttccaagagtgataacaatgtgaaaaactcattgtgctt |
55202735 |
T |
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| Q |
153 |
gatcgtttgaatgagcttaatagggaaaatatggttgatatggttatggatgtgcttagggcgctttcaaaggctcgtaactatgttgttagaaggcaga |
252 |
Q |
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| T |
55202734 |
gatcgtttgaatgagcttaatagggaaattatggttgatatggttatggatgtgcttagggcgttttcgaaggctcgtaactatgttgttggaaggaaga |
55202635 |
T |
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| Q |
253 |
ttattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttattgtgatgcttgagaaggaggttgttaaaactaagagtggggagcatca |
352 |
Q |
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| T |
55202634 |
ttattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttgttgtgatgcttgagaaggaggttgttaaaactaagactggggagcatct |
55202535 |
T |
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| Q |
353 |
aaagaagaagtataggaagatgctggtggaggctatt |
389 |
Q |
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| T |
55202534 |
gaagaagaagtataggaagatgctggtggaggctatt |
55202498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 1471863 - 1472202
Alignment:
| Q |
14 |
tacttctgttgtttatgaatgtgctggtacacttgttttggttagttctacacctaatgcaattaaagttgctgctactacttattgtcagttattactt |
113 |
Q |
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| T |
1471863 |
tactgctgttgtttatgaatgtgctggtacgcttgtttcgcttagttctgcaccaaccgcgattaaagcggctgcgaatacttattgtcagttattgctt |
1471962 |
T |
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| Q |
114 |
tcttccaagagtgataacaatgtgaaactcattgtgcttgatcgtttgaatgagct---------taatagggaaaatatggttgatatggttatggatg |
204 |
Q |
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| T |
1471963 |
tct---cagagtgataacaatgtgaagcttattgtgcttgatcggcttaacgagcttaagagggataatagggagattatggttgatatggttatggatg |
1472059 |
T |
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| Q |
205 |
tgcttagggcgctttcaaaggctcgtaactatgttgttagaaggcagattattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttat |
304 |
Q |
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| T |
1472060 |
tgcttagggcgttatc---gactcctaatcatgatattaggagaaagactattgatattgctcttgagcttattacgccgaagaatattgatcaggttgt |
1472156 |
T |
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| Q |
305 |
tgtgatgcttgagaaggaggttgttaaaactaagagtggggagcat |
350 |
Q |
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| T |
1472157 |
tatgatgcttaagaaggaggttgttaagacgcagagcggggagcat |
1472202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 46466957 - 46467160
Alignment:
| Q |
19 |
ctgttgtttatgaatgtgctggtacacttgttttggttagttctacacctaatgcaattaaagttgctgctactacttattgtcagttattactttcttc |
118 |
Q |
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| T |
46466957 |
ctgttgtttatgaatgtgctggtgcacttgtttcactta---ctgcacctactgcaattgaagctgctgctagtgcttattgtaagttgttgatttctc- |
46467052 |
T |
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| Q |
119 |
caagagtgataacaatgtgaaactcattgtgcttgatcgtttgaatgagcttaa---------tagggaaaatatggttgatatggttatggatgtgctt |
209 |
Q |
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| T |
46467053 |
--atagtgataacaatgtgaaacttattgtgcttgatcgtcttaacgagcttaagaggtataatagggagattatggttgatatggttatggatgtgctt |
46467150 |
T |
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| Q |
210 |
agggcgcttt |
219 |
Q |
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| T |
46467151 |
agggcacttt |
46467160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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