View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15332_low_2 (Length: 406)
Name: NF15332_low_2
Description: NF15332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15332_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 85 - 391
Target Start/End: Original strand, 26412550 - 26412856
Alignment:
| Q |
85 |
tgaagctttttatattctgattgaaaagaatgcatttctctcttatcttttttcaaataatttatctttacaagacatggttctttatattatgatgatc |
184 |
Q |
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| T |
26412550 |
tgaagctttttatattctgattgaaaagaatgcatttctctcttatcttttttcaaataatttatctttacaagacatggttctttatattatgatgatc |
26412649 |
T |
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| Q |
185 |
attgacatataaaaatttcatatatgcagggcatacaggatcatgggccttagcctaccctgacattgtagcatgtgccaacatgttctggtggccagct |
284 |
Q |
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| T |
26412650 |
attgacatataaaaatttcatatatgcagggcatacaggatcatgggccttagcctaccctgacattgtagcatgtgccaacatgttctggtggccagct |
26412749 |
T |
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| Q |
285 |
ggaagtgattggcccgatcgtcttgcggcagaaccgggaacaggtcatttaaatcccttaaaccccaagacctaccaagtcctgaagaatgtcatacgcg |
384 |
Q |
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| T |
26412750 |
ggaagtgattggcccgatcgtcttgcggcagaaccgggaacaggtcatttaaatcccttaaaccccaagacctaccaagtcctgaagaatgtcatacgcg |
26412849 |
T |
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| Q |
385 |
atgtaac |
391 |
Q |
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||||||| |
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| T |
26412850 |
atgtaac |
26412856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 26412506 - 26412454
Alignment:
| Q |
19 |
ctcatggtaagccacagtcgaagatgctttatgctttgccaacttagaattca |
71 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26412506 |
ctcatggtaagacacattcgaagatgctttatgctttgccaacttagaattca |
26412454 |
T |
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