View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15333_high_4 (Length: 294)
Name: NF15333_high_4
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 36649782 - 36650055
Alignment:
| Q |
2 |
agcataggaacttcagttgctgtcagctcaacattgattgcattagttttgatcggaagagcagcttttgttttccctattgcaaacattgcaaattgca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36649782 |
agcataggaacttcagttgctgtcagctcaacattgattgcattagttttgatcggaagagcagcttttgttttccctattgcaaacattgcaaattgca |
36649881 |
T |
|
| Q |
102 |
ccaaaacaagagagagcactaaaattgagtttcgatcgcaggtgattactgtcttactagtaccgaaacttcacattgaaggagtatccgacactgactt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
36649882 |
ccaaaacaagagagagcactaaaattgagtttcgatcgcaggtgattactgtcttactagtaccgaaacttcacattgaaggagtatccga-accgactt |
36649980 |
T |
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| Q |
202 |
atgtgattacattcaattacttctatcttcttaaactattgccagtgacgaagtgtcagtattgtgtccgtgttc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
36649981 |
atgtgattacattcaattacttctatcttcttaaactattgccagtgtcgaagtgtcagcattgtgtccgtgttc |
36650055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 36654682 - 36654832
Alignment:
| Q |
2 |
agcataggaacttcagttgctgtcagctcaacattgattgcattagttttgatcggaagagcagcttttgttttccctattgcaaacattgcaaattgca |
101 |
Q |
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||||||||||||||| |||| ||||||||||| || ||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||| | |
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| T |
36654682 |
agcataggaacttcaattgcggtcagctcaacgtttcttgcattggttttgattggaagagcagcttttgtgttccctattgcaaacatttcaaattact |
36654781 |
T |
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| Q |
102 |
ccaaaacaagagagagcactaaaattgagtttcgatcgcaggtgattactg |
152 |
Q |
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| ||||||||||| | ||||||||||||||||| |||||||| |||| |
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| T |
36654782 |
tcgtgacaagagagagtgccaaaattgagtttcgatctcaggtgataactg |
36654832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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