View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15333_low_10 (Length: 243)

Name: NF15333_low_10
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15333_low_10
NF15333_low_10
[»] chr3 (4 HSPs)
chr3 (45-243)||(27634112-27634310)
chr3 (45-243)||(34518930-34519127)
chr3 (45-134)||(34142944-34143033)
chr3 (82-134)||(8584419-8584471)
[»] chr4 (5 HSPs)
chr4 (45-134)||(15041708-15041797)
chr4 (45-134)||(15112627-15112716)
chr4 (45-134)||(15039979-15040068)
chr4 (45-134)||(15114356-15114445)
chr4 (45-134)||(16003460-16003549)
[»] chr6 (3 HSPs)
chr6 (45-134)||(34244690-34244779)
chr6 (45-134)||(13214080-13214169)
chr6 (83-134)||(30580060-30580111)
[»] chr7 (3 HSPs)
chr7 (45-134)||(10867944-10868033)
chr7 (45-129)||(10866227-10866311)
chr7 (45-116)||(20186082-20186153)
[»] chr8 (1 HSPs)
chr8 (82-134)||(30187826-30187878)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 27634310 - 27634112
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtctaattaacaatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27634310 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtctaattaacaatc 27634211  T
Q  145 gttttccatttgttcttattcacattatacatattatacaaacacaatataagtagctacctccctcgtaacccatcaaatcaaataagcttttcagtc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27634210 gttttccatttgttcttattcacattatacatattatacaaacacaatataagtagctacctccctcgtaacccatcaaatcaaataagcttttcagtc 27634112  T

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Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 34519127 - 34518930
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtctaattaacaatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34519127 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtctaattaacaacc 34519028  T
Q  145 gttttccatttgttcttattcacattatacatattatacaaacacaatataagtagctacctccctcgtaacccatcaaatcaaataagcttttcagtc 243  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34519027 gttttccatttgttctta-tcacatgatacatattatacaaacacaatataagtagctacctccctcgtaacccatcaaatcaaataagcttttcagtc 34518930  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 34142944 - 34143033
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34142944 actagagttagttaaggtagttagagttggttaaatgttagttagagagagctatagttagttacaagtagttagggtaattgagttcta 34143033  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 8584419 - 8584471
Alignment:
Q  82 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    ||||||| ||||||||||||||||||||  |||||||||  ||||||||||||    
T  8584419 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtcta 8584471  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 15041797 - 15041708
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15041797 actagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15041708  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 15112627 - 15112716
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15112627 actagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15112716  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 15040068 - 15039979
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  15040068 actagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15039979  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 15114356 - 15114445
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  15114356 actagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15114445  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 16003460 - 16003549
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16003460 actagagttagttaaggtagttagagttggttaaatgtgagttagaaagaactatagttagttacaagtagttagggtaattgaggtcta 16003549  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 34244690 - 34244779
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  34244690 actagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 34244779  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 13214169 - 13214080
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||||||||||||||| ||||| |||| || ||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  13214169 actagagttagttaaggtagttagggttggttaaattttagttcgagagaactatagttagttacaagtggttagggtaattgaagtcta 13214080  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 30580111 - 30580060
Alignment:
Q  83 tagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30580111 tagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 30580060  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 10867944 - 10868033
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    |||||| ||||||||||| |||||||||| || ||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||||    
T  10867944 actagaattagttaaggtagttagagttggttaaatgttagttaaaaggaactatagttagttacaactagttagggtaattgaggtcta 10868033  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 10866227 - 10866311
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgag 129  Q
    |||||| ||||||||||| |||||||||| || |||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  10866227 actagaattagttaaggtagttagagttggttaaatgttagttagaatgaactatagttagttacaactagttagggtaattgag 10866311  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 20186082 - 20186153
Alignment:
Q  45 actagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagt 116  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  20186082 actagagttagttaaggtagttagagttggttaaatgttagttagagagaactatagtttgttacaagtagt 20186153  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 30187878 - 30187826
Alignment:
Q  82 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 134  Q
    ||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||    
T  30187878 ttagttacagagaactataattagttacatgtagttaaggaaattgaggtcta 30187826  T

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