View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15333_low_11 (Length: 237)
Name: NF15333_low_11
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 38605341 - 38605543
Alignment:
| Q |
27 |
gtgttcccgaaatcatcccgagagagttagcagattaacaaccattggatattaagttttatatgattgactgcttcattaatnnnnnnnnnnnnnnntt |
126 |
Q |
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| T |
38605341 |
gtgttcccgaaatcatttcgagagagttggcagattaacaaccattggatcgtaagttttatatgattgactgcttcatcaaaaaaaaaata-------t |
38605433 |
T |
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| Q |
127 |
catcgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtattccgaccaacagaaactataattggatag |
226 |
Q |
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| T |
38605434 |
caccgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtattccatccaacagaaactataattggatag |
38605533 |
T |
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| Q |
227 |
aatggttttt |
236 |
Q |
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|||||||||| |
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| T |
38605534 |
aatggttttt |
38605543 |
T |
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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 52362877 - 52363066
Alignment:
| Q |
42 |
tcccgagagagttagcagattaacaaccattggatattaagttttatatgattgactgcttcattaatnnnnnnnnnnnnnnnttcatcgcttcatcata |
141 |
Q |
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| T |
52362877 |
tcccgagagagttggcagattaacagcgattggatattaagttttatatgattgactgcttcattaaaaaaaaaaaaa------tcattgcttcatcata |
52362970 |
T |
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| Q |
142 |
aaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtattccgaccaacagaaactataattggatagaatggtttttc |
237 |
Q |
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| T |
52362971 |
aaataataacaatcagatttaactacaaacaaaataacaccaaggatgtcgtgtattccgtccaacagaaactataattggatataatggtttttc |
52363066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 5318372 - 5318165
Alignment:
| Q |
27 |
gtgttcccgaaatcatcccgagagagttagcagattaacaaccattggatattaagttttatatgattgactgcttcattaatnnnnnnnnnnnnnnntt |
126 |
Q |
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||||||| ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| || | |
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| T |
5318372 |
gtgttccagaaatcatctcgagagagttggcaaattaacaaccattggatcttaagttttatatgattgactgcttcataaa---aaaaaataaaaaatc |
5318276 |
T |
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| Q |
127 |
catcgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtattccgaccaacagaaactataattggatag |
226 |
Q |
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|| |||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||| | ||| || |||||||||||||||| |
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| T |
5318275 |
caccgcttcatcataaactaataacaatcaaatttaattaaaaactaaataacatcaaggatgccgtgtattctggccagcataaactataattggatat |
5318176 |
T |
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| Q |
227 |
aatggtttttc |
237 |
Q |
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|||| |||||| |
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| T |
5318175 |
aatgatttttc |
5318165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 36859077 - 36859285
Alignment:
| Q |
28 |
tgttcccgaaatcatcccgagagagttagcagattaacaaccattggatattaagttttatatgattgactgcttcattaatnnnnnnnnnnnnnnn--- |
124 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||| || |
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| T |
36859077 |
tgttcccgaaatcatcccaagagaattggcagattaacaaccattggatcttaagttttatatgattgaccgcttcatcaaaaaaaacaaaaaaacaaaa |
36859176 |
T |
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| Q |
125 |
--ttcatcgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtattccgaccaacagaaactataattgg |
222 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
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| T |
36859177 |
cattcaccgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccg------ccatccagtagaaactataattgg |
36859270 |
T |
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| Q |
223 |
atagaatggtttttc |
237 |
Q |
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||||||||||||||| |
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| T |
36859271 |
atagaatggtttttc |
36859285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 7494636 - 7494563
Alignment:
| Q |
125 |
ttcatcgcttcatcataaaataataacaatcagatttaattaaaaacaaaataacaccaaggatgccgtgtatt |
198 |
Q |
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|||| ||||||||||| | |||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
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| T |
7494636 |
ttcaccgcttcatcatgattaaataacaatcagatttaattaaaaactaaatcacaccaagaatgccgtgtatt |
7494563 |
T |
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