View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15333_low_12 (Length: 237)
Name: NF15333_low_12
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 42323204 - 42323007
Alignment:
| Q |
22 |
gaaggacacaaaataatctaataactaattacgaaaatttgtcatacacacaagtattaataaatttgtataaaaggaaaggagtagtaaggtgttgggc |
121 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42323204 |
gaaggacacaaaataatctaataactaattactaaaacttgtcatgcacacaagtattaataaatttgtataaaaggaaaggagtagtaaggtgttgggt |
42323105 |
T |
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| Q |
122 |
cggtgaaaagacttatgttgtattaaagataaagttgatccagatgtgggtggttggttcgcaaatggagtagtgtgtcgagtggatcatggtgaaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42323104 |
tggtgaaaagacttatgttgtattaaagataaagttgatccagatgtgggtggtttgttcgcaaatgaagtagtgtgtcgagtggatcatggtgaaaa |
42323007 |
T |
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