View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15333_low_14 (Length: 202)

Name: NF15333_low_14
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15333_low_14
NF15333_low_14
[»] chr3 (3 HSPs)
chr3 (16-182)||(28737069-28737235)
chr3 (75-182)||(24675190-24675297)
chr3 (23-154)||(4647449-4647580)
[»] chr6 (3 HSPs)
chr6 (16-182)||(34065487-34065653)
chr6 (30-182)||(20853446-20853598)
chr6 (114-182)||(12299649-12299717)
[»] chr7 (2 HSPs)
chr7 (36-147)||(8848433-8848544)
chr7 (75-182)||(24064438-24064545)
[»] chr4 (2 HSPs)
chr4 (27-182)||(16985299-16985454)
chr4 (78-158)||(22642076-22642156)
[»] chr2 (3 HSPs)
chr2 (27-182)||(21810497-21810652)
chr2 (22-160)||(27521373-27521511)
chr2 (54-160)||(19698765-19698871)
[»] chr5 (3 HSPs)
chr5 (75-160)||(23955906-23955991)
chr5 (78-159)||(26468237-26468318)
chr5 (119-158)||(20325552-20325591)
[»] chr8 (1 HSPs)
chr8 (78-181)||(15940330-15940433)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 28737235 - 28737069
Alignment:
Q  16 atgaactattgttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28737235 atgaactattgttgctttcctcttgtataaccaatgagtatactttgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaa 28737136  T
Q  116 ttgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28737135 ttgatcattcaaaacagtcaaaaactggataacttgatcctcaagcatgtaattacaagcttctctc 28737069  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 24675297 - 24675190
Alignment:
Q  75 agtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgag 174  Q
    |||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||    
T  24675297 agtggatcaagcataagcacctgagtattaaccacattgaattgatcattcaaaccagtcaagaactggataacttgatcttcaagtatgaaattacgag 24675198  T
Q  175 cttctctc 182  Q
     |||||||    
T  24675197 tttctctc 24675190  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 4647449 - 4647580
Alignment:
Q  23 attgttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatca 122  Q
    |||||| ||||||||||| |||||||   | ||||||| ||| || || || |||||||||| ||| || |  ||||| || || || ||||||||||||    
T  4647449 attgttactttcctcttggataaccacaaaatatactttgttgatagaaggaagtggatcaatcatcagtacttgagttttgataactttgaattgatca 4647548  T
Q  123 ttcaaaccagtcaaaaactggataacttgatc 154  Q
    ||||||| ||||||||||| ||| ||||||||    
T  4647549 ttcaaactagtcaaaaactagattacttgatc 4647580  T

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Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 34065653 - 34065487
Alignment:
Q  16 atgaactattgttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  34065653 atgaactattgttgctttcctcttgtataaccaatgagtatactttgttaattgaggggagtggatcaagcataagcacctgagtcttaatcacgttgaa 34065554  T
Q  116 ttgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  34065553 ttgatcattcaaaccagtcagaaactggatgacttgatcctcaagcctgtaattacgagcttctctc 34065487  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 20853446 - 20853598
Alignment:
Q  30 ctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaac 129  Q
    ||||| ||||| | ||||||||| || || | ||| || || || |||||||||||||| ||||  ||||| || |  ||||||||||| ||||||||||    
T  20853446 ctttcttcttgaacaaccaatgaataaaccttgttgatagaaggaagtggatcaagcataagcacttgagttttcacaacattgaattggtcattcaaac 20853545  T
Q  130 cagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    |||| | |||||| || |||||||| |||||  || |||| | ||||||||||    
T  20853546 cagtaagaaactgaatgacttgatcttcaagtctgaaatttctagcttctctc 20853598  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 12299717 - 12299649
Alignment:
Q  114 aattgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    |||||||||||||| ||||| |  ||||||||||||||| | |||||  || |||||| ||||||||||    
T  12299717 aattgatcattcaatccagtaaggaactggataacttgaccttcaagtctgaaattacaagcttctctc 12299649  T

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Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 8848544 - 8848433
Alignment:
Q  36 tcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtca 135  Q
    ||||| |||||||| ||||| |||| ||| || || || |||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||    
T  8848544 tcttgaataaccaaagagtacactttgttgatagaaggaagtggatcaagcataagcacttgagtcttaataacattgaattgatcattcaaaccagtca 8848445  T
Q  136 aaaactggataa 147  Q
    |||||| |||||    
T  8848444 aaaactagataa 8848433  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 24064438 - 24064545
Alignment:
Q  75 agtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgag 174  Q
    ||||||||||| || |||| |||||||||||  |||||||||||||||||||||| | |||| || |||||||||||||| |||||  || |||||||||    
T  24064438 agtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaactaatcaagaattggataacttgatcttcaagtctgaaattacgag 24064537  T
Q  175 cttctctc 182  Q
    ||||||||    
T  24064538 cttctctc 24064545  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 16985454 - 16985299
Alignment:
Q  27 ttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattca 126  Q
    |||||||| || || | ||||||||| || || | |||||| || || |||||||| |||||||||| ||| |||||||  || ||||||||||||||||    
T  16985454 ttgctttcttcctgaacaaccaatgaatagaccttgttaatagaaggaagtggatctagcatgagcacctgtgtcttaacaacgttgaattgatcattca 16985355  T
Q  127 aaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    ||||||||||||||||||| ||||| || || ||  |||||  |||||||||||||    
T  16985354 aaccagtcaaaaactggatgacttggtcttctagtctgtaacaacgagcttctctc 16985299  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 22642156 - 22642076
Alignment:
Q  78 ggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctca 158  Q
    ||||||||||  || ||||||||||| | ||||  ||||||||||||||| ||||| ||||| || || | ||||||||||    
T  22642156 ggatcaagcaatagaatctgagtctttaccacagagaattgatcattcaagccagttaaaaattgcattatttgatcctca 22642076  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 21810497 - 21810652
Alignment:
Q  27 ttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattca 126  Q
    |||||||| || || | ||||||||| || || | |||||| || || |||||||| ||||||||||  || |||||||  || ||||||||||||||||    
T  21810497 ttgctttcttcctgaacaaccaatgaatagaccttgttaatagaaggaagtggatctagcatgagcacttgtgtcttaacaacgttgaattgatcattca 21810596  T
Q  127 aaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagcttctctc 182  Q
    ||||||||||||||||||| ||||| || || ||  |||||  |||||||||||||    
T  21810597 aaccagtcaaaaactggatgacttggtcttctagtctgtaacaacgagcttctctc 21810652  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 27521373 - 27521511
Alignment:
Q  22 tattgttgctttcctcttgtataaccaatgagtatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatc 121  Q
    |||| |||||||| || || | ||||||||| || || | ||| || || || |||||||||||||| |||| |||||| || |  ||||||||||||||    
T  27521373 tattattgctttcttcctgaacaaccaatgaatacaccttgttgatagaaggaagtggatcaagcataagcacctgagttttcacaacattgaattgatc 27521472  T
Q  122 attcaaaccagtcaaaaactggataacttgatcctcaag 160  Q
    |||||||||||| |||||||| ||||||||||| |||||    
T  27521473 attcaaaccagttaaaaactgaataacttgatcttcaag 27521511  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 19698871 - 19698765
Alignment:
Q  54 tatacttcgttaattgaggggagtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgat 153  Q
    ||||||| |||||| || || || |||||||||||||| ||||| ||||| |  || ||||||||||||||||||||||| | |||||| ||||||||||    
T  19698871 tatactttgttaatggaaggaagaggatcaagcatgagaatctgtgtcttcactacgttgaattgatcattcaaaccagttagaaactgcataacttgat 19698772  T
Q  154 cctcaag 160  Q
    | |||||    
T  19698771 cttcaag 19698765  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 23955991 - 23955906
Alignment:
Q  75 agtggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctcaag 160  Q
    |||||||||||||| |||| |||||| || |  |||||||||||||||||||||||||  |||||||| ||||||||||| |||||    
T  23955991 agtggatcaagcataagcacctgagttttcacaacattgaattgatcattcaaaccaggtaaaaactgaataacttgatcttcaag 23955906  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 26468237 - 26468318
Alignment:
Q  78 ggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctcaa 159  Q
    |||||||||||||| ||||| ||||| |  || ||||||||||||||||||||| | | |||||| ||||||||||| ||||    
T  26468237 ggatcaagcatgagaatctgtgtcttcactacgttgaattgatcattcaaaccaatgagaaactgcataacttgatcttcaa 26468318  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 20325552 - 20325591
Alignment:
Q  119 atcattcaaaccagtcaaaaactggataacttgatcctca 158  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  20325552 atcattcaaaccagtcaaaaactgcataatttgatcctca 20325591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 15940433 - 15940330
Alignment:
Q  78 ggatcaagcatgagcatctgagtcttaatcacattgaattgatcattcaaaccagtcaaaaactggataacttgatcctcaagcatgtaattacgagctt 177  Q
    ||||||||||| |||| |||||| || |  |||||||| || |||||||||||| | | |||||| ||||| ||||| |||||  | ||||| |||||||    
T  15940433 ggatcaagcataagcacctgagttttcacaacattgaactggtcattcaaaccaataagaaactgaataacctgatcttcaagactataattgcgagctt 15940334  T
Q  178 ctct 181  Q
    ||||    
T  15940333 ctct 15940330  T

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