View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15333_low_2 (Length: 1196)

Name: NF15333_low_2
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15333_low_2
NF15333_low_2
[»] chr3 (7 HSPs)
chr3 (22-650)||(51727903-51728513)
chr3 (860-1178)||(51728719-51729037)
chr3 (712-809)||(51728575-51728672)
chr3 (974-1072)||(21744975-21745073)
chr3 (973-1034)||(32324599-32324661)
chr3 (973-1039)||(2361101-2361167)
chr3 (1048-1082)||(27796942-27796976)
[»] chr2 (2 HSPs)
chr2 (973-1074)||(38764242-38764343)
chr2 (973-1034)||(36095496-36095557)
[»] chr8 (2 HSPs)
chr8 (973-1084)||(39502550-39502661)
chr8 (1048-1077)||(4671746-4671775)
[»] chr4 (6 HSPs)
chr4 (974-1078)||(14949607-14949711)
chr4 (975-1034)||(48190726-48190785)
chr4 (973-1077)||(4299370-4299474)
chr4 (993-1034)||(19195630-19195671)
chr4 (973-1082)||(33381591-33381700)
chr4 (1006-1035)||(52625616-52625645)
[»] chr5 (3 HSPs)
chr5 (978-1083)||(22088106-22088211)
chr5 (973-1034)||(28568212-28568273)
chr5 (990-1034)||(11744190-11744234)
[»] chr1 (1 HSPs)
chr1 (973-1077)||(38753591-38753695)
[»] chr7 (3 HSPs)
chr7 (973-1034)||(24890485-24890546)
chr7 (973-1067)||(25296816-25296910)
chr7 (973-1034)||(49107416-49107477)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 22 - 650
Target Start/End: Original strand, 51727903 - 51728513
Alignment:
Q  22 ttgaaagctcgtgaacaatgtatcttcgagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagcttggatttctag 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51727903 ttgaaagctcgtgaacaatgtatcttggagtagatatgtatttttactatttttgacaaagctcgtgaacagcatttgtcctctaagctaggatttctag 51728002  T
Q  122 acaaatcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaattaaactccctgtccaagtaatggatatggaag 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||||| |    
T  51728003 acaaatcgatgtagatttgttaaacttggatatttatttattttttactaaaaaccgaaccattaaa-----ccccctgtccaagtaatggatatggagg 51728097  T
Q  222 gattaactgtgaaccaaaatgaatgatagagtagagttgaggtaaatatagaaaattgatgacagtagtacattgaatttaacacacgtaggtgagaaag 321  Q
    |||||||||||||||||||||||||||||||      ||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||     
T  51728098 gattaactgtgaaccaaaatgaatgatagaga-----tgaggtaaatatagaaaattga---cagtagtacattgaatttaacacacgtaggttagaaa- 51728188  T
Q  322 nnnnnnnnnnntggttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattct 421  Q
               | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728189 ----aaaaaattcgttggaattccaaccaaaatgggacatgcaattggagattggttcaacccacactatgcattctcaattccaattttgttacattct 51728284  T
Q  422 cataataattagaatagaaccccttccagattttcattttttcctttcagaatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728285 cataataattagaatagaaccccttccagattttcattttttcctttcataatttctaatcaaattcattattgctgagttttgttcgaatgttgaatct 51728384  T
Q  522 taaaaaggttgcccaatgtgatgtaatgtaatgttggaaactgttcaggaaattgccgtatatcttcatagatttcacaatcttgatctctttaagcaag 621  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728385 taaaaaggttgctcaatgtgatgtaatgtaatgttggaaactgttcaggaaattgccgtatatcttcatagatttcacaatcttgatctctttaagcaag 51728484  T
Q  622 ggtgggtatatatatacattcattcatca 650  Q
    |||||||||||||||||||||||||||||    
T  51728485 ggtgggtatatatatacattcattcatca 51728513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 860 - 1178
Target Start/End: Original strand, 51728719 - 51729037
Alignment:
Q  860 gaagcaatcaaactcccttatatcctgtaccttggctaggaagtaatattacaacatgacaccgtagtgaaatattaaccctccggttcttaggggaagg 959  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728719 gaagcaatcaaactcccttatatcctgtaccttggctaggaagtaatattacaacatgacaccgtagtgaaatattaaccctccggttcttaggggaagg 51728818  T
Q  960 ggccctaggaatgaagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaacc 1059  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728819 ggccctaggaatgaagtaaagtctgaccaataattgtttcaaccaaaaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaacc 51728918  T
Q  1060 acttgagctcaatcacttagttatcaccaccatagtcaaatatgattgagcgagtgcgtaaaaacaatagagaacaataaaatcaacgcattgtttaaag 1159  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  51728919 acttgagctcaatcacttggttatcaccaccatagtcaaatatgattgagcgagtgcgtaaaaacaatagagaacaataacatcaacgcattgttgaaag 51729018  T
Q  1160 gggtctgcacctttagctt 1178  Q
    |||||||||||||||||||    
T  51729019 gggtctgcacctttagctt 51729037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 712 - 809
Target Start/End: Original strand, 51728575 - 51728672
Alignment:
Q  712 tatagatggtatcggattaagattaaagtaagatgggaagatagtgaaaatattaattcattcggtattccagctagagttgttcaatacgaaggtaa 809  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728575 tatagatggtatcggattaagattaaagtacgatgggaagatagtgaaaatattaattcattcggtattccagctagagttgttcaatacgaaggtaa 51728672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 974 - 1072
Target Start/End: Original strand, 21744975 - 21745073
Alignment:
Q  974 agtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    |||| |||||| |||| ||||||||||  |  ||||||||||||||||||||| | ||||| ||| |||  || |||||||||||||| ||||||||||    
T  21744975 agtatagtctggccaagaattgttccacacgggaatcaaactcgggttctcccaatcgatttatcattaggtggagctcattaaccacgtgagctcaat 21745073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 973 - 1034
Target Start/End: Original strand, 32324599 - 32324661
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcggg-ttctcccgaacgatt 1034  Q
    |||||||| ||| |||| ||||||||| |||| |||||||||||||| |||||||||||||||    
T  32324599 aagtaaagcctggccaagaattgttcccaccaggaatcaaactcgggtttctcccgaacgatt 32324661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 973 - 1039
Target Start/End: Original strand, 2361101 - 2361167
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatct 1039  Q
    |||||||||||||||||||||| || | || ||||||||| ||| | ||||||| ||||||| ||||    
T  2361101 aagtaaagtctgaccaataattatttccactaagaatcaagctcagtttctcccaaacgattcatct 2361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1048 - 1082
Target Start/End: Original strand, 27796942 - 27796976
Alignment:
Q  1048 agctcattaaccacttgagctcaatcacttagtta 1082  Q
    |||||||||||||||||||||||||||||| ||||    
T  27796942 agctcattaaccacttgagctcaatcacttggtta 27796976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 973 - 1074
Target Start/End: Original strand, 38764242 - 38764343
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    ||||||||||||  ||| ||||||| || ||||||||| || |||||||||||||||  ||| ||||||   || |||||||||||||||||||||||||    
T  38764242 aagtaaagtctggtcaagaattgttgcacccaagaatcgaattcgggttctcccgaattattcatctttgggtggagctcattaaccacttgagctcaat 38764341  T
Q  1073 ca 1074  Q
    ||    
T  38764342 ca 38764343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 973 - 1034
Target Start/End: Complemental strand, 36095557 - 36095496
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    |||||||||||| |||| ||||||||| |||| ||||  |||| ||||||||||||||||||    
T  36095557 aagtaaagtctggccaagaattgttcccaccaggaattgaacttgggttctcccgaacgatt 36095496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 973 - 1084
Target Start/End: Original strand, 39502550 - 39502661
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    ||||||||| |||||||| ||| ||||| | | || |||||||||| |||||  |||||||| ||| || | ||||||| ||||||||||||| ||||||    
T  39502550 aagtaaagtttgaccaatgattattccagctaggattcaaactcggattctcttgaacgattcatcgttgcctgtagcttattaaccacttgaactcaat 39502649  T
Q  1073 cacttagttatc 1084  Q
    ||| ||||||||    
T  39502650 cacatagttatc 39502661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1048 - 1077
Target Start/End: Original strand, 4671746 - 4671775
Alignment:
Q  1048 agctcattaaccacttgagctcaatcactt 1077  Q
    ||||||||||||||||||||||||||||||    
T  4671746 agctcattaaccacttgagctcaatcactt 4671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 974 - 1078
Target Start/End: Original strand, 14949607 - 14949711
Alignment:
Q  974 agtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaatc 1073  Q
    ||||||||||| | || |||||||||||| | ||||| | |||| ||||||| ||||||||  |||||  ||  |||||||||||||||||| |||||||    
T  14949607 agtaaagtctggcaaaaaattgttccaactatgaatcgacctcgagttctcctgaacgattcgtcttttgatagagctcattaaccacttgaactcaatc 14949706  T
Q  1074 actta 1078  Q
    |||||    
T  14949707 actta 14949711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1034
Target Start/End: Complemental strand, 48190785 - 48190726
Alignment:
Q  975 gtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    |||||||||| |||  |||||||||| | | |||||||||||||||||||||||||||||    
T  48190785 gtaaagtctggccaggaattgttccacctaggaatcaaactcgggttctcccgaacgatt 48190726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 973 - 1077
Target Start/End: Complemental strand, 4299474 - 4299370
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    |||||||| ||| | || ||||||| || ||| ||||| |||||| |||||||||| |||||  || ||   || |||||||||||||||||||| ||||    
T  4299474 aagtaaagcctggctaagaattgttacacccaggaatcgaactcgcgttctcccgagcgattcgtcctttggtgaagctcattaaccacttgagcccaat 4299375  T
Q  1073 cactt 1077  Q
    |||||    
T  4299374 cactt 4299370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1034
Target Start/End: Original strand, 19195630 - 19195671
Alignment:
Q  993 ttgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    |||||||| ||| ||||| |||||||||||||||||||||||    
T  19195630 ttgttccacccaggaatcgaactcgggttctcccgaacgatt 19195671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1082
Target Start/End: Original strand, 33381591 - 33381700
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    |||||||||||||  ||  |||||| ||| ||  |||||||||||| |||||  |||  |||  |||||  |||||| ||||||| |||||||| |||||    
T  33381591 aagtaaagtctgataaaatattgtttcaatcagaaatcaaactcggattctcttgaaaaatttgtcttttgatgtagttcattaatcacttgagttcaat 33381690  T
Q  1073 cacttagtta 1082  Q
    ||||||||||    
T  33381691 cacttagtta 33381700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1006 - 1035
Target Start/End: Complemental strand, 52625645 - 52625616
Alignment:
Q  1006 gaatcaaactcgggttctcccgaacgattg 1035  Q
    ||||||||||||||||||||||||||||||    
T  52625645 gaatcaaactcgggttctcccgaacgattg 52625616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 978 - 1083
Target Start/End: Complemental strand, 22088211 - 22088106
Alignment:
Q  978 aagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaatcactt 1077  Q
    |||||| ||||||||||| |||| |||||||||||||||||||| ||||||| ||||  || ||    | |||||||||||||||||||   ||||||||    
T  22088211 aagtctaaccaataattgctccacccaagaatcaaactcgggttttcccgaaggatttgtcctttgggggagctcattaaccacttgagtctaatcactt 22088112  T
Q  1078 agttat 1083  Q
     |||||    
T  22088111 ggttat 22088106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 973 - 1034
Target Start/End: Complemental strand, 28568273 - 28568212
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||||| || ||||||||||||||    
T  28568273 aagtaaagtcttaccaataattgtttcaaccaaaaatccaactcaggatctcccgaacgatt 28568212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 990 - 1034
Target Start/End: Original strand, 11744190 - 11744234
Alignment:
Q  990 taattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    |||||||||||  |||||||||||||||||||||| |||||||||    
T  11744190 taattgttccactcaagaatcaaactcgggttctcacgaacgatt 11744234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 973 - 1077
Target Start/End: Complemental strand, 38753695 - 38753591
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagctcaat 1072  Q
    |||||||||| | ||||  ||| |||||  || ||||| |||||||||||||||||||| ||  || ||| ||| | ||||||||||||||||||||||     
T  38753695 aagtaaagtccggccaaggatttttccagtcaggaatcgaactcgggttctcccgaacgtttcgtccttaaatgaaactcattaaccacttgagctcaac 38753596  T
Q  1073 cactt 1077  Q
    |||||    
T  38753595 cactt 38753591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 973 - 1034
Target Start/End: Complemental strand, 24890546 - 24890485
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    ||||||||||||||||| ||||||||| |  | |||||||||||||||||||| ||| ||||    
T  24890546 aagtaaagtctgaccaagaattgttcccattaggaatcaaactcgggttctcctgaaagatt 24890485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 973 - 1067
Target Start/End: Original strand, 25296816 - 25296910
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgattgatctttacatgtagctcattaaccacttgagc 1067  Q
    ||||| |||||| |||| |||||||||| | | |||||||||||  ||||||| ||||||||  || ||   || ||||||||||||||||||||    
T  25296816 aagtatagtctggccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtcctttggtggagctcattaaccacttgagc 25296910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1034
Target Start/End: Original strand, 49107416 - 49107477
Alignment:
Q  973 aagtaaagtctgaccaataattgttccaaccaagaatcaaactcgggttctcccgaacgatt 1034  Q
    |||||| |||| |||||  |||||||||| ||||| |||||||||||| ||| |||||||||    
T  49107416 aagtaatgtctaaccaaggattgttccaatcaagattcaaactcgggtcctcacgaacgatt 49107477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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