View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15333_low_3 (Length: 908)
Name: NF15333_low_3
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_3 |
 | |
|
| [»] scaffold0246 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0246 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 252 - 908
Target Start/End: Complemental strand, 13983 - 13327
Alignment:
| Q |
252 |
caagataacattgaacaaaaggaaatatatgagcagctttccaagttaggtgacagtccatatccactaattcttccggaaatactgatcagaggaatcc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13983 |
caagataacattgaacaaaaggaaatatatgagcagctttccaagttaggtgacagtccatatccactaattcttccggaaatactgatcagaggaatcc |
13884 |
T |
|
| Q |
352 |
ttgaacggagaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatccttcagtgaacttacg |
451 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13883 |
ttgaacgaagaaccaacatcagaggcggaagtatgaaaatgatcctattatttgcatccgtcacaccaaacttaaccattgatcctttagtgaacttacg |
13784 |
T |
|
| Q |
452 |
tgctttgcaaatttgtttccactgcccataaatgatgcacggaagatccttgccattactgaacttcatgttacattttcagctataccccaagtaatca |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
13783 |
tgctttgcaaatttgtttccactgcccataaatgatgtacggaagatccttgccattactgaacttcatgttacatttccagctataccgcaagtaatca |
13684 |
T |
|
| Q |
552 |
actatcgtcagttcggtcgcttcagcaggcaaaacagactgacgaaatccaagccaaaccagctcctgtttacaaccaagaaatggaaacattaagataa |
651 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
13683 |
actatcggcagttcggtcgcttcagcagacaaaacagactgacaaaatccaagccaaaccagctcatgtttacaaccaagatatggaaacattaagataa |
13584 |
T |
|
| Q |
652 |
ggaaaaaagttgcattaagaaaaagtatacaaacttattcgaaacatatctcaccaaatttccagagtccacatcagaagctgtcaactgtttctgaatg |
751 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13583 |
ggaaaaaagttgcattaacaaaaagtatacaaacttattcaaaacatatctcaccaaatttccagagtccacatcagaagctgtcaactgtttctgaatg |
13484 |
T |
|
| Q |
752 |
gagtggtaaaatttctttggaagaacaaaaaagcaagagcattaggaatggtagtgttccctgcagagcttagggacatgtgtttcaaaagaaatctctt |
851 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13483 |
gtgtggtaaaatttctttggaagaacaaaaaagcaagagcattaggaatggtagtgttccctgcagagcttggggacatgtgtttcaaaagaaatctctt |
13384 |
T |
|
| Q |
852 |
cggaggactgaacctaggatagaggaattccctttctttcctagtaactccacgaaa |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13383 |
cggaggactgaacctaggatagaggaattccctttctttcctagtaactccacgaaa |
13327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 14215 - 14062
Alignment:
| Q |
18 |
ctaagcagagggttgtttaaaaggaaattaagtctagcagaacaaaaatagtagtcaaagcaaaacaacattaaattagtgttgattaaacatgacaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14215 |
ctaagcagagggttgtttaaaaggaaattaagtctagcagaacaaaaatagtagtcaaagcaaaacaacattaaattagtgttgattaaacatgacaata |
14116 |
T |
|
| Q |
118 |
gcccacaaaactgaaatccagtcgcaaaagatcaacacaacataacataacagc |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14115 |
gcccacaaaaccgaaatccagtcgcaaaagatcaacacagcataacataacagc |
14062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University