View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15333_low_4 (Length: 536)
Name: NF15333_low_4
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 40885864 - 40885358
Alignment:
| Q |
19 |
atatgacctaataccaatacaaaggacttaatnnnnnnncacaaaaacaccaacagtgatactaatactatactgttggagtggtgatagatccatctgt |
118 |
Q |
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| T |
40885864 |
atatgacctaataccaatacaaaggacttaataaaaaa-cacaaaaacaccaacagtgatactaatactatactgttggagtggtgcaacatccatctgt |
40885766 |
T |
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| Q |
119 |
tttacatataataattgttatatggaggataaccatgagtctgaggaccaaaataaggatcataattttgatagggatcaaaattctgatagtaggaccc |
218 |
Q |
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| T |
40885765 |
tttacatataataattgttatatggaggataaccatgagtctgaggaccaaaataaggatcataattttgatagggatcaaaattctgatagtaggaccc |
40885666 |
T |
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| Q |
219 |
tgatggagggggatagtatccactgggatatgttgtagggtaagcagacatattgttcccataggaatattgttctccagtccgaacccaacaaagttct |
318 |
Q |
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| T |
40885665 |
tgatggagggggatagtatccactgggatatgttgtagggtaagcagacatattgttcccataggaatattgttctccagtccgaacccaacaaagttct |
40885566 |
T |
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| Q |
319 |
actttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctgagatgtatatcatcccttcatttgtatcaaaattgtagttta |
418 |
Q |
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| T |
40885565 |
actttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctgagatgtatatcatcccttcatttgtatcaaaattgtagttta |
40885466 |
T |
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| Q |
419 |
cacctaaaatcaacattaacatatagtatatttagatatttcatcataagtaaacaaatagatttaaaattaaaacttgaaggatgagacacaaaacacg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40885465 |
cacctaaaatcaacattaacatatagtatatttagatatttcatcataagaaaacaaatagatttaaaattaaaacttgcaggatgagacacaaaacaca |
40885366 |
T |
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| Q |
519 |
tacctttg |
526 |
Q |
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|||||||| |
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| T |
40885365 |
tacctttg |
40885358 |
T |
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