View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15333_low_5 (Length: 528)
Name: NF15333_low_5
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 512
Target Start/End: Complemental strand, 29943241 - 29942741
Alignment:
| Q |
12 |
agatgaataagtagggtatctaaaatttgaactctgacccttacacatattaattactattcgagatgtcatctttttaaataaattttaattactcgga |
111 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
29943241 |
agatgaataagtagagtatctgaaatttgaactccgatccttacatatattaattacaattcgagatgtcatttttttaaataaattttaattactcgaa |
29943142 |
T |
|
| Q |
112 |
tgattaatttatgtgattgcgcgcgacatatattggtattatttacaacaagaatatgtattattaacaagaatattcttgaagtacaatgtttaaacac |
211 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29943141 |
tgattaatttatatggtagcgcgcgacatatattggtattatttacaacaagaatatgtattattaacaagaatattcttgaagtacaatgtttaaacac |
29943042 |
T |
|
| Q |
212 |
taggcaccaaacacgatcatgtttattaacacaaccggaccatgtttcttgctgccagtccaattttccacttgttttcttccaaatagacaatgagctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29943041 |
taggcaccaaacacgatcatgtttattaacacaaccggaccatgtttcttgctgccagtccaattttccacttgttttcttccaaatagacaatgagctt |
29942942 |
T |
|
| Q |
312 |
catatagtggttcccaccactttcagaggctaaaattcttcagaaacaaaacaccataaaccgcaattatgagaactaaataaaaccacacaaagaacat |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29942941 |
catttagtggttcccaccactttcagaggctaaaattcttcagaaacaaaacaccataaaccgcaattatgagaactaaataaaaccaaacaaagaacat |
29942842 |
T |
|
| Q |
412 |
aataaatttgatataaatgaactatgaatgcatgcaaaagtcacagaaaacatgatgcagtatggactgtcaaattgacctaagtttaaaaacttgtttg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29942841 |
aataaatttgatataaatgaactatgaatgcatgcaaaagtcacagaaaacatgatgcagtatggactgtcaaattgacctaagtttaaaaacttgtttg |
29942742 |
T |
|
| Q |
512 |
t |
512 |
Q |
| |
|
| |
|
|
| T |
29942741 |
t |
29942741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University