View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15333_low_8 (Length: 265)
Name: NF15333_low_8
Description: NF15333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15333_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 11526529 - 11526300
Alignment:
| Q |
14 |
agcagcacagagcataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaatttt |
113 |
Q |
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|||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |
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| T |
11526529 |
agcaacacaaagcataccaaaaatacttcctacatgaccagaacactaacagtttgaaaatttttaatacaacaccaccaactttgaaaatatcaatttt |
11526430 |
T |
|
| Q |
114 |
acattctagtacacaacaggtacttaccttctacacactcaacatctactattttctcttatgttagagcaagccatgttaaacgtgttcaaaagttgca |
213 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
11526429 |
acattctaatacacaacaggtacttaccttctatacactcaacatttactattttctcttaagttagagcaagccaggttaaaagtgttcaaaagttgca |
11526330 |
T |
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| Q |
214 |
acacaaagatgaccatccaagactacatgt |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11526329 |
acacaaagatgaccatccaagactacatgt |
11526300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 4079190 - 4079087
Alignment:
| Q |
26 |
cataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtac |
125 |
Q |
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|||||||||| ||||| || |||||||| ||||||| |||||| |||||||| ||||||| ||| |||| |||||||||||||| |||||||| || ||| |
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| T |
4079190 |
cataccaaaattactttcttccagaccaaaacaccatcagtttaaaaaatatgaatacaacaccgccaagtttgaaaatatcaaatttacattatactac |
4079091 |
T |
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| Q |
126 |
acaa |
129 |
Q |
| |
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|||| |
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| T |
4079090 |
acaa |
4079087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 16350744 - 16350847
Alignment:
| Q |
26 |
cataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtac |
125 |
Q |
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|||||||||| ||||| || |||||||| | ||||| |||||| |||||||| ||||||| |||||||| |||||||||||||| |||||||| || ||| |
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| T |
16350744 |
cataccaaaattactttcttccagaccaaaccaccatcagtttaaaaaatatgaatacaacaccaccaagtttgaaaatatcaaatttacattatactac |
16350843 |
T |
|
| Q |
126 |
acaa |
129 |
Q |
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|||| |
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|
| T |
16350844 |
acaa |
16350847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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