View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15334_high_3 (Length: 275)

Name: NF15334_high_3
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15334_high_3
NF15334_high_3
[»] chr4 (4 HSPs)
chr4 (139-259)||(52016657-52016779)
chr4 (13-102)||(52016876-52016965)
chr4 (102-146)||(52016787-52016831)
chr4 (63-103)||(42375094-42375134)
[»] chr3 (1 HSPs)
chr3 (58-103)||(30904328-30904373)
[»] chr5 (2 HSPs)
chr5 (63-103)||(32485633-32485673)
chr5 (63-103)||(291181-291221)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 52016779 - 52016657
Alignment:
Q  139 aatgtcattcaaatgctatatcctacatcatctgcttgagaagaaataagacggga--atttacttctggtcttcggaaaattctgatgcaagaaatgat 236  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||    
T  52016779 aatgtcactcaaatgctatatcctacatcacctgcttgagaagaaataagactggagaatttacatctggtcttcggaaaattctgatgcaagaaatgat 52016680  T
Q  237 tcaaaaggagtgtcggaaaaatg 259  Q
    |||||||||||||||||||||||    
T  52016679 tcaaaaggagtgtcggaaaaatg 52016657  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 52016965 - 52016876
Alignment:
Q  13 caaagggaaaggtatacggtatgtatcttgacatacatcacggggagcacttgggcgacattggtgacattaatcaatcacaatatcaca 102  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||| |||||||||||||||||||||| |||||    
T  52016965 caaaaggaaaggtatacggtatgtatcttgacatacattacggggaacacttgggtcacatcggtgacattaatcaatcacaatgtcaca 52016876  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 52016831 - 52016787
Alignment:
Q  102 aaagccacttgcgacatcatcgttgatcaatattatcaatgtcat 146  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  52016831 aaagccacttgtgacatcatggttgatcaatattatcaatgtcat 52016787  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 42375134 - 42375094
Alignment:
Q  63 ttgggcgacattggtgacattaatcaatcacaatatcacaa 103  Q
    ||||| ||||||||||||||| |||||||||||| ||||||    
T  42375134 ttgggtgacattggtgacattgatcaatcacaatgtcacaa 42375094  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 30904373 - 30904328
Alignment:
Q  58 agcacttgggcgacattggtgacattaatcaatcacaatatcacaa 103  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||    
T  30904373 agcacttgggtgacatcgatgacattaatcaatcacaatatcacaa 30904328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 32485673 - 32485633
Alignment:
Q  63 ttgggcgacattggtgacattaatcaatcacaatatcacaa 103  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  32485673 ttgggtgacattggtgacattgatcaatcacaatatcacaa 32485633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 291221 - 291181
Alignment:
Q  63 ttgggcgacattggtgacattaatcaatcacaatatcacaa 103  Q
    ||||| ||||||||||||||| |||||||||||| ||||||    
T  291221 ttgggtgacattggtgacattgatcaatcacaatgtcacaa 291181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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