View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15334_low_2 (Length: 654)

Name: NF15334_low_2
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15334_low_2
NF15334_low_2
[»] chr4 (9 HSPs)
chr4 (1-344)||(35790433-35790775)
chr4 (1-305)||(35784586-35784890)
chr4 (333-468)||(35790873-35791008)
chr4 (537-653)||(35791077-35791193)
chr4 (88-309)||(35778230-35778451)
chr4 (1-103)||(35778104-35778206)
chr4 (332-468)||(35779103-35779233)
chr4 (540-615)||(35780683-35780759)
chr4 (614-653)||(35780776-35780815)
[»] chr1 (2 HSPs)
chr1 (1-118)||(32509436-32509553)
chr1 (331-396)||(49781890-49781953)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35790433 - 35790775
Alignment:
Q  1 ttttcttccatttaccttctttctttgatctcctcttgaatttattttccttagtacaatatacatatttaaacatggatatttgacaacatttctttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  35790433 ttttcttccatttaccttctttctttgatctcctcttgaatttgttttccatagtgcaatatacatatttaaacatggatctttgacaacatttctttca 35790532  T
Q  101 taaggaacccatgaccactacctgcccctactgtatctttattctttactcgttcattcctttcttttgccatcaaatggggatatgaaagtatataagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35790533 taaggaacccatgaccactacctgcccctactgtatctttattctttactcgttcattcctttcttttgccatcaaat-gggatatgaaagtatataagt 35790631  T
Q  201 taccttttcgtttggcctcgattttaaggtaatgtcccttagtgacaaactgtttatcattgaggaaagtataccattccaaggaaagatggattaacaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  35790632 taccttttcgtttggcctcgattttaaggtaatgtcccttagcgacaaactgtttatcattgaggaaagtataccattgcaaagaaagatggattaacaa 35790731  T
Q  301 aagttcaaggtgttggagtaatacttaaaccctcctagttagtt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35790732 aagttcaaggtgttggagtaatacttaaaccctcctagttagtt 35790775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 35784586 - 35784890
Alignment:
Q  1 ttttcttccatttaccttctttctttgatctcctcttgaatttattttccttagtacaatatacatatttaaacatggatatttgacaacatttctttca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  35784586 ttttcttccatttaccttctttctttgatctcctctttaatttattttccttggtgcaatatacatatttaaacatggatctttgacaacatttctttca 35784685  T
Q  101 taaggaacccatgaccactacctgcccctactgtatctttattctttactcgttcattcctttcttttgccatcaaatggggatatgaaagtatataagt 200  Q
    |||||||||||||||||||||  |||||| |||||||||||||| ||||||||||||||| |||  ||||||||||   || |||||  |||||||||||    
T  35784686 taaggaacccatgaccactactagccccttctgtatctttattc-ttactcgttcattccattcaattgccatcaa--tggaatatggcagtatataagt 35784782  T
Q  201 taccttttcgtttggcctcgattttaaggta---atgtcccttagtgacaaactgtttatcattgaggaaagtataccattccaaggaaagatggattaa 297  Q
    |||||||| | |||||||||| |||||||||   ||||||||| |||||| || |||||||||||||||| ||||| |||| |||||||||||||||| |    
T  35784783 tacctttttgcttggcctcgaatttaaggtaatgatgtcccttggtgacagaccgtttatcattgaggaaggtataacattgcaaggaaagatggattta 35784882  T
Q  298 caaaagtt 305  Q
    ||||||||    
T  35784883 caaaagtt 35784890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 35790873 - 35791008
Alignment:
Q  333 tcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatct 432  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35790873 tcctagttagttttaatggtcaatttgaaattcaaatgtaaatctctgagtcataaatatgtgcaaactataacttttctctcttcatttgtatctatct 35790972  T
Q  433 atctatacctttgaattagaaaatttaatgaattga 468  Q
    ||||||||||||||||||||||||||||||||||||    
T  35790973 atctatacctttgaattagaaaatttaatgaattga 35791008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 537 - 653
Target Start/End: Original strand, 35791077 - 35791193
Alignment:
Q  537 tcgtatttgtcaaacaacatatatttcatataatacgtgttcatggacacgtttgtttgtattttattccagcaggtttagatgtgtattccctacctta 636  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35791077 tcgtatttgtcaaacaacatatatttcatataatatgtgttcatggacacgtttgtttgtattttattccagcaggtttagatgtgtattccctacctta 35791176  T
Q  637 aattgtgttactcttta 653  Q
    |||||||||||||||||    
T  35791177 aattgtgttactcttta 35791193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 88 - 309
Target Start/End: Original strand, 35778230 - 35778451
Alignment:
Q  88 aacatttctttcataaggaacccatgaccactacctgcccctactgtatctttattctttactcgttcattcctttcttttgccatcaaatggggatatg 187  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||   || ||| |    
T  35778230 aacatttctttcataaggaacccatcaccactacctgcccctactgtatctttattc-ttactcgttcattcctttcaattgccatgaa--tggaatacg 35778326  T
Q  188 aaagtatataagttaccttttcgtttggcctcgattttaaggta---atgtcccttagtgacaaactgtttatcattgaggaaagtataccattccaagg 284  Q
      ||||||||| ||||||||| | |||||||||| ||||| |||   ||||| ||| |||||| ||||||||||||||||||| ||||| |||| |||||    
T  35778327 gcagtatataaattacctttttgcttggcctcgaatttaaagtaatgatgtctcttggtgacagactgtttatcattgaggaaggtataacattgcaagg 35778426  T
Q  285 aaagatggattaacaaaagttcaag 309  Q
    ||||||||| |||||||||||||||    
T  35778427 aaagatggactaacaaaagttcaag 35778451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35778104 - 35778206
Alignment:
Q  1 ttttcttccatttaccttctttctttgatctcctcttgaatttattttccttagtacaatatacatatttaaacatggatatttgacaacatttctttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35778104 ttttcttccatttaccttctttctttgatctcctcttgaatttattttccttagtgcaatatacatatttaaacatggatatttgacaacatttctttca 35778203  T
Q  101 taa 103  Q
    |||    
T  35778204 taa 35778206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 332 - 468
Target Start/End: Original strand, 35779103 - 35779233
Alignment:
Q  332 ctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatc 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||| ||||||||||||||   |||||||||||||||||||| |||||    
T  35779103 ctcctagttagttttaatggtcaatttgaaattcaaatgtaaa--tctgagtcatagatatgtgcaaacta---cttttctctcttcatttgta-ctatc 35779196  T
Q  432 tatctatacctttgaattagaaaatttaatgaattga 468  Q
    ||| |||||||| || |||||||||||||||||||||    
T  35779197 tatttataccttcgatttagaaaatttaatgaattga 35779233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 540 - 615
Target Start/End: Original strand, 35780683 - 35780759
Alignment:
Q  540 tatttgtcaaacaacatatatttcatataa-tacgtgttcatggacacgtttgtttgtattttattccagcaggttt 615  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  35780683 tatttgtcaaacaacatatatttcatataaatacgtgttcatggacacgtttgtttctattttattccagcaggttt 35780759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 614 - 653
Target Start/End: Original strand, 35780776 - 35780815
Alignment:
Q  614 ttagatgtgtattccctaccttaaattgtgttactcttta 653  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  35780776 ttagatgtgtattccctaccttaaattgtgttgctcttta 35780815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 32509436 - 32509553
Alignment:
Q  1 ttttcttccatttaccttctttctttgatctcctcttgaatttattttccttagtacaatatacatatttaaacatggatatttgacaacatttctttca 100  Q
    |||||| || |||||||||||||||| || ||||||  | ||  |||| | |||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  32509436 ttttctcccgtttaccttctttcttttatttcctctcaatttgttttttcctagtgcaatatacatatttaaacaaggaactttgacaacatttctttca 32509535  T
Q  101 taaggaacccatgaccac 118  Q
    ||||||||| ||||||||    
T  32509536 taaggaacctatgaccac 32509553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 49781953 - 49781890
Alignment:
Q  331 cctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgc 396  Q
    |||||||||||||| |  || ||||||| |||||||||||||||||||  ||||||||||| ||||    
T  49781953 cctcctagttagttatgttgatcaatttgaaattcaaatgtaaatctc--agtcataaataagtgc 49781890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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