View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15334_low_3 (Length: 526)
Name: NF15334_low_3
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15334_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 56 - 514
Target Start/End: Original strand, 43413562 - 43414011
Alignment:
| Q |
56 |
aaatatataaaaaagaatcatattttcattcatcataactttaatccatgatctttacccaagttctcacaccgtttgtgaaataaaagatattctcaca |
155 |
Q |
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| T |
43413562 |
aaatatataaaaaagaatcatattttcattcatcataactttaatccatgatctttacccaagttctcacaccgtttgtgaaataaaagatattatcaca |
43413661 |
T |
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| Q |
156 |
agaagttttaagaattaccatgatacagataaaataatataattnnnnnnnttgtcaaacatttagcaattactattaattaattcctactaaaatagaa |
255 |
Q |
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| T |
43413662 |
agaagttttaagaat---------acagataaaataatataattaaaaaaattgtcaaacatttagcaattactattaattaattcctactaaaatagaa |
43413752 |
T |
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| Q |
256 |
taaatatttgatgatcaaatatcattttcttcctcgtgttaagagatagaaacgtaaatatatttagttcaacttagataatttttacacacgatccaaa |
355 |
Q |
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| T |
43413753 |
taaatatttgataatcaaatatcattttcttcctcgtgttaagagatagaaacgtaaatatatttagttcaacttagataatttttacacacgatccaaa |
43413852 |
T |
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| Q |
356 |
ttcaaaaaatatatcttataattaaaataattttggagggtgttatacgcaccacaccactaaaagagctgttaaataaatcccaaatctctaagtctca |
455 |
Q |
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| T |
43413853 |
ttcaaaaaatatatcttataattaaaataattttggagggtgttatacgcaccacaccactaaaagagctgttaaataaatcccaaatctctaagtctca |
43413952 |
T |
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| Q |
456 |
cttattaagccttatattcccttaaacatgggtctcttctttagggaacttcattttga |
514 |
Q |
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| T |
43413953 |
cttattaagccttatattcccttaaacatgggtctcttctttagggaacttcatcttga |
43414011 |
T |
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