View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15334_low_4 (Length: 457)
Name: NF15334_low_4
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15334_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 46238764 - 46239213
Alignment:
| Q |
1 |
tgtgtggggtcgtttaagacacgtgtcttaatgttattggtccaattttatgtgtgcaggacaacaccaagtttaactgcatttttcaccatgggggaga |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46238764 |
tgtgtggggtcgttaaagacacgtgtcttaatgttattggtccaattttttgagtgcaggacaacaccaagttcaactgcatttttcaccatgggggaga |
46238863 |
T |
|
| Q |
101 |
gtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238864 |
gtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaactt |
46238963 |
T |
|
| Q |
201 |
gtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcag |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238964 |
gtttgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcag |
46239063 |
T |
|
| Q |
301 |
atgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239064 |
atgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactt |
46239163 |
T |
|
| Q |
401 |
tgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
450 |
Q |
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| T |
46239164 |
tgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 23540223 - 23540366
Alignment:
| Q |
75 |
aactgcatttttcaccatgggggagagtttgtcagggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgctt |
174 |
Q |
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|||||||| ||||||||||| || |||||| | ||| | ||||||| ||||| |||||||| || |||| |||||||||| ||| || ||||||| |
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| T |
23540223 |
aactgcatctttcaccatggtggggagttttttaggcataaaaccattttctatagaggtggtgtggaaacaattgtgtctgatatagaccctgatgctt |
23540322 |
T |
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| Q |
175 |
ggaaagtaggtgttattaggcaacttgtgtgtagctggggttat |
218 |
Q |
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||||||||| ||||| | | ||||||| | |||||||||||| |
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| T |
23540323 |
ggaaagtagcagttatcaaggaacttgttaggagctggggttat |
23540366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 3455894 - 3455444
Alignment:
| Q |
1 |
tgtgtggggtcgtttaagacacgtgtcttaatgttattggtccaattttatgtgtgcaggacaacaccaagtttaactgcatttttcaccatgggggaga |
100 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3455894 |
tgtgtggggtcttataagacacgtgtcttaatgttattggtccaattttttgtgtgcaggacaacaccaagttcaactgcatttttcaccatgggggaga |
3455795 |
T |
|
| Q |
101 |
gtttgtcagggaagaaaccatattctacagaggtgggg-ttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaact |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455794 |
gtttgtcagggaagaaaccgtattctacagaggtgggggttaaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaact |
3455695 |
T |
|
| Q |
200 |
tgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3455694 |
tgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgca |
3455595 |
T |
|
| Q |
300 |
gatgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaact |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455594 |
gatgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaact |
3455495 |
T |
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| Q |
400 |
ttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455494 |
ttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
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