View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15334_low_5 (Length: 432)
Name: NF15334_low_5
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15334_low_5 |
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| [»] scaffold0180 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0180 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 114 - 341
Target Start/End: Original strand, 22331 - 22558
Alignment:
| Q |
114 |
ttttctgaacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctgagatcgaatttggt |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22331 |
ttttctgaacagaaccatcatacctaccaccacgaccatgtttaactcataagaagaaaaaatgggttttataatagaattagctgagatcgaatttggt |
22430 |
T |
|
| Q |
214 |
tttgaaaaaat-gggttaataatatttttcaaatccttgtatattgtctctatgtccaaacatgagattttttaatttatgaggttgaatccggatttag |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22431 |
tttgaaaaaatggggttaataatatttttcaaatccttgtatattgtctctatgtccaaacatgaga-tttttaatttatgaggttgaatccggatttag |
22529 |
T |
|
| Q |
313 |
agtaggggttttctagattcaattcttga |
341 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
22530 |
agtaggggttttctagattcaattcttga |
22558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 114 - 341
Target Start/End: Complemental strand, 46740426 - 46740197
Alignment:
| Q |
114 |
ttttctgaacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctgagatcgaatttggt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
46740426 |
ttttctgaacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatgggttttataatagaattagctgagatcgaatttgat |
46740327 |
T |
|
| Q |
214 |
tttgaaaaaatgggttaataatatttttcaaatccttgtatattgtctc--tatgtccaaacatgagattttttaatttatgaggttgaatccggattta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46740326 |
tttgaaaaaatgggttaataatatttttcaaatccttgtatattgtctctatatgtccaaacatgatattttttaatttatgaggttgaatccggattta |
46740227 |
T |
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| Q |
312 |
gagtaggggttttctagattcaattcttga |
341 |
Q |
| |
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||||||||||||||||| |||||||||||| |
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| T |
46740226 |
gagtaggggttttctagtttcaattcttga |
46740197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 39412951 - 39413173
Alignment:
| Q |
121 |
aacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggtt |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| |||||| |
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| T |
39412951 |
aacagaaccatcataactaccaccaccaccatgtttaactcataagaagttaaaatggttttcataatagaattagcttagacttagatcgaaattggtt |
39413050 |
T |
|
| Q |
215 |
ttgaaaaaatgggttaataatatttttcaaatccttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccgga |
307 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
39413051 |
ttgaaaaaatgggttaataatgtttttcaaatccttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcatgaggttgaatccgga |
39413149 |
T |
|
| Q |
308 |
tttagagtaggggttttctagattc |
332 |
Q |
| |
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|||| ||| || ||||||||||||| |
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| T |
39413150 |
tttatagt-ggagttttctagattc |
39413173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 332
Target Start/End: Complemental strand, 18605721 - 18605498
Alignment:
| Q |
121 |
aacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggtt |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| |||||| |
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| T |
18605721 |
aacagaaccatcataactaccaccaccaccatgtttaactcataagaaattaaaatggttttcataatagaattagcttagacttagatcgaaattggtt |
18605622 |
T |
|
| Q |
215 |
ttgaaaaaatgggttaataatatttttcaaatccttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccgga |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||| ||| |
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| T |
18605621 |
ttgaaaaaatgggttaataatgtttttcaaatccttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcatgaggttgaatctgga |
18605523 |
T |
|
| Q |
308 |
tttagagtaggggttttctagattc |
332 |
Q |
| |
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|||| ||| || ||||||||||||| |
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| T |
18605522 |
tttatagtgggagttttctagattc |
18605498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 32537831 - 32538054
Alignment:
| Q |
121 |
aacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggtt |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| |||||| |
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| T |
32537831 |
aacagaaccatcataactaccaccaccaccatgtttaactcataagaagttaaaatggttttcataatagaattagcttagactttgatcgaaattggtt |
32537930 |
T |
|
| Q |
215 |
ttgaaaaaatgggttaataatatttttcaaatccttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccgga |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||| |||| || ||||||| |||||| |
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| T |
32537931 |
ttgaaaaaatgggttaataatgtttttcaaatccttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcataaggttgattccgga |
32538029 |
T |
|
| Q |
308 |
tttagagtaggggttttctagattc |
332 |
Q |
| |
|
|||| ||| || ||||||||||||| |
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|
| T |
32538030 |
tttatagtgggagttttctagattc |
32538054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 332
Target Start/End: Original strand, 33687112 - 33687333
Alignment:
| Q |
121 |
aacagaaccatcatacctaccaccaccaccatgtttaactcataagaagaaaaaatggattttataatagaattagctga------gatcgaatttggtt |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| | ||||||| |||||| |
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|
| T |
33687112 |
aacagaaccatcataactaccaccaccaccatgtttaactcataagaagttaaaatggttttcataatagaattagcttagactttgatcgaaattggtt |
33687211 |
T |
|
| Q |
215 |
ttgaaaaaatgggttaataatatttttcaaatccttgtat---attgtctctatg--tccaaacatgagattttttaatttatgaggttgaatccggatt |
309 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| ||| |||||| || || | ||||||||||| ||||||||| ||||||||||||||| ||| |
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|
| T |
33687212 |
ttgaaaaagtgggttaataatgtttttcaaatccttatatatcattgtcactgtgaatgcaaacatgaga-tttttaattcatgaggttgaatccgaatt |
33687310 |
T |
|
| Q |
310 |
tagagtaggggttttctagattc |
332 |
Q |
| |
|
|| ||| || ||||||||||||| |
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| T |
33687311 |
tatagtgggagttttctagattc |
33687333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 64100 - 63979
Alignment:
| Q |
217 |
gaaaaaatgggtta-ataatatttttcaaatccttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccggat |
308 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||||||| |
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|
| T |
64100 |
gaaaaaatgggttccataatgtttttaaaatccttgtatatcattgtctctatgtgaatgcaagcatgag-ttttttaattcatgaggttgaatccggat |
64002 |
T |
|
| Q |
309 |
ttagagtaggggttttctagatt |
331 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
64001 |
ttagagttggggttttctagatt |
63979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 42112067 - 42112027
Alignment:
| Q |
294 |
aggttgaatccggatttagagtaggggttttctagattcaa |
334 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||||| |
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|
| T |
42112067 |
aggttgaatccgaattttgagtgggggttttctagattcaa |
42112027 |
T |
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Back To:
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