View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15334_low_7 (Length: 250)

Name: NF15334_low_7
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15334_low_7
NF15334_low_7
[»] chr7 (32 HSPs)
chr7 (11-250)||(8157463-8157692)
chr7 (94-167)||(9866530-9866603)
chr7 (10-66)||(13707672-13707728)
chr7 (18-66)||(23587821-23587869)
chr7 (99-174)||(10937632-10937707)
chr7 (11-66)||(20174770-20174825)
chr7 (18-61)||(21227384-21227427)
chr7 (11-65)||(9916715-9916769)
chr7 (11-65)||(9924627-9924681)
chr7 (11-65)||(16223994-16224048)
chr7 (11-65)||(21102127-21102181)
chr7 (105-174)||(18662471-18662540)
chr7 (134-174)||(3329687-3329727)
chr7 (110-174)||(3734626-3734690)
chr7 (134-174)||(7318303-7318343)
chr7 (134-174)||(31492960-31493000)
chr7 (134-174)||(39273204-39273244)
chr7 (99-174)||(9864320-9864395)
chr7 (11-66)||(9890374-9890429)
chr7 (10-61)||(19398664-19398715)
chr7 (75-174)||(21227209-21227308)
chr7 (110-167)||(8938244-8938301)
chr7 (137-174)||(13418564-13418601)
chr7 (134-175)||(17153183-17153224)
chr7 (11-64)||(21885010-21885063)
chr7 (138-174)||(8979039-8979075)
chr7 (134-174)||(13759889-13759929)
chr7 (15-55)||(17829770-17829809)
chr7 (134-174)||(18369009-18369049)
chr7 (18-66)||(18495556-18495604)
chr7 (10-66)||(21912333-21912389)
chr7 (134-174)||(23099981-23100021)
[»] chr5 (16 HSPs)
chr5 (11-65)||(29263436-29263490)
chr5 (11-66)||(32417201-32417256)
chr5 (11-65)||(15544240-15544294)
chr5 (112-174)||(17185493-17185555)
chr5 (105-174)||(23265184-23265253)
chr5 (18-66)||(27921255-27921303)
chr5 (18-61)||(15470133-15470176)
chr5 (99-170)||(24852166-24852237)
chr5 (11-66)||(26307802-26307857)
chr5 (137-174)||(23388870-23388907)
chr5 (134-170)||(15375911-15375947)
chr5 (134-174)||(17171582-17171622)
chr5 (110-174)||(19004231-19004295)
chr5 (110-174)||(23014615-23014678)
chr5 (134-174)||(24245573-24245613)
chr5 (18-66)||(24852033-24852081)
[»] chr2 (17 HSPs)
chr2 (11-64)||(25070328-25070381)
chr2 (93-168)||(8447038-8447113)
chr2 (11-66)||(45621736-45621791)
chr2 (105-167)||(25070164-25070226)
chr2 (14-52)||(29719088-29719126)
chr2 (18-64)||(36357289-36357335)
chr2 (134-174)||(25618586-25618626)
chr2 (134-174)||(32085493-32085533)
chr2 (15-61)||(26292574-26292620)
chr2 (110-167)||(25939194-25939251)
chr2 (134-174)||(15339268-15339308)
chr2 (134-174)||(17743505-17743545)
chr2 (134-174)||(20174664-20174704)
chr2 (134-174)||(25888249-25888289)
chr2 (110-174)||(27418396-27418460)
chr2 (18-66)||(27869887-27869935)
chr2 (110-174)||(27909124-27909188)
[»] chr1 (12 HSPs)
chr1 (18-66)||(6501414-6501462)
chr1 (94-167)||(24306945-24307018)
chr1 (134-174)||(51473905-51473945)
chr1 (134-174)||(13345365-13345405)
chr1 (110-174)||(17610261-17610325)
chr1 (11-66)||(24267636-24267691)
chr1 (112-174)||(29242549-29242611)
chr1 (137-174)||(21666640-21666677)
chr1 (134-174)||(9787908-9787948)
chr1 (110-174)||(12012805-12012869)
chr1 (134-174)||(12208631-12208671)
chr1 (134-174)||(21449119-21449159)
[»] scaffold0238 (1 HSPs)
scaffold0238 (18-65)||(19301-19348)
[»] chr8 (13 HSPs)
chr8 (11-66)||(12268959-12269014)
chr8 (110-174)||(26615247-26615311)
chr8 (134-174)||(2637628-2637668)
chr8 (134-174)||(17101922-17101962)
chr8 (10-66)||(31288529-31288585)
chr8 (99-174)||(5850971-5851046)
chr8 (11-66)||(15238987-15239042)
chr8 (99-174)||(24904663-24904738)
chr8 (11-65)||(5851133-5851187)
chr8 (121-175)||(14075623-14075677)
chr8 (110-167)||(17972207-17972264)
chr8 (138-174)||(17509276-17509312)
chr8 (134-174)||(29382390-29382430)
[»] chr4 (19 HSPs)
chr4 (11-66)||(10107215-10107270)
chr4 (11-65)||(19900769-19900823)
chr4 (11-65)||(22526555-22526609)
chr4 (134-174)||(13692698-13692738)
chr4 (134-174)||(17216847-17216887)
chr4 (18-66)||(20315189-20315237)
chr4 (11-66)||(23080519-23080573)
chr4 (20-65)||(12761435-12761480)
chr4 (138-174)||(7582327-7582363)
chr4 (18-66)||(11521055-11521103)
chr4 (134-174)||(11521220-11521260)
chr4 (23-55)||(11935259-11935291)
chr4 (134-174)||(12578295-12578335)
chr4 (134-174)||(13908884-13908924)
chr4 (18-66)||(15049945-15049993)
chr4 (18-66)||(15104431-15104479)
chr4 (134-174)||(19929704-19929744)
chr4 (134-174)||(22526394-22526434)
chr4 (134-174)||(24639483-24639523)
[»] chr3 (13 HSPs)
chr3 (105-174)||(28728974-28729043)
chr3 (11-65)||(25756865-25756918)
chr3 (105-174)||(8557129-8557198)
chr3 (134-174)||(12805919-12805959)
chr3 (110-170)||(17438436-17438496)
chr3 (11-66)||(23056017-23056072)
chr3 (105-174)||(821514-821583)
chr3 (137-174)||(21301948-21301985)
chr3 (21-66)||(21380441-21380486)
chr3 (134-174)||(10744932-10744972)
chr3 (138-174)||(10917948-10917984)
chr3 (134-174)||(13908255-13908295)
chr3 (18-66)||(14183232-14183280)
[»] chr6 (15 HSPs)
chr6 (18-66)||(9291846-9291894)
chr6 (11-66)||(28585885-28585940)
chr6 (100-170)||(28586025-28586095)
chr6 (18-66)||(9277129-9277177)
chr6 (134-174)||(9516815-9516855)
chr6 (134-174)||(9726052-9726092)
chr6 (134-174)||(23645796-23645836)
chr6 (18-66)||(33655735-33655783)
chr6 (11-66)||(7542811-7542865)
chr6 (11-66)||(9386254-9386309)
chr6 (11-66)||(9726212-9726267)
chr6 (76-167)||(26215360-26215449)
chr6 (134-174)||(11176980-11177020)
chr6 (110-170)||(22410332-22410392)
chr6 (134-174)||(23143752-23143792)
[»] scaffold0006 (2 HSPs)
scaffold0006 (18-66)||(222894-222942)
scaffold0006 (18-66)||(18601-18649)
[»] scaffold0136 (1 HSPs)
scaffold0136 (99-174)||(15460-15534)
[»] scaffold0016 (1 HSPs)
scaffold0016 (137-174)||(3561-3598)
[»] scaffold0394 (1 HSPs)
scaffold0394 (10-66)||(13762-13817)
[»] scaffold0155 (1 HSPs)
scaffold0155 (134-174)||(36024-36064)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 8157692 - 8157463
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattcaaaaacccttatcttttatttaaatgtttttctgttttcaaaaa 110  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8157692 taattctaacaaataaatagagaggtttcgaagaatcataaccaccgctaacattcaaaaacccgtatattttatttaaatgtttttctgttttcaaaaa 8157593  T
Q  111 agtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcactttcccaccgcctcttacgactttattattgttccctat 210  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||          | |||||||| ||||||||||||||||| | |    
T  8157592 agtaacgtgaattgtctaattcgaacgacaatccatatggataggatactctccttat----------ctgcctcttatgactttattattgttccttgt 8157503  T
Q  211 atattgctaatttgagcaccgatgaaatgcaatgcgtttt 250  Q
    | ||||||||||||| ||| ||||||||||||| ||||||    
T  8157502 aaattgctaatttgatcactgatgaaatgcaatacgtttt 8157463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 9866530 - 9866603
Alignment:
Q  94 ttttctgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||||||| |||| |||||||||||||||| ||||| ||||||||||   | |||||| |||||||||||||    
T  9866530 ttttctgtttccaaataagtaacgtgaattgtctagttagaacgacaattattgtggatatgatactctactta 9866603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 13707728 - 13707672
Alignment:
Q  10 ataattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||| |||||||||| |||| |||||||||||||| ||||||||||||    
T  13707728 ataattccaacaattaaatagaggagatttgaagaatcataaccgccgctaacattc 13707672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 23587869 - 23587821
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  23587869 aacaaataaatagaggggtttcgaagaattctaaccaccgctaacattc 23587821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 10937707 - 10937632
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||| |||||| |||||||||||  ||  ||||||||||||| |||||| |||||| |||||||||||||    
T  10937707 tgttctcaaataagtaatgtgaattgtttgattgaaacgacaatccatgtggatacgatactatacttatcacttt 10937632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 20174825 - 20174770
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| |||||||||||||| ||||||||||||||| |||| ||| |||||||||    
T  20174825 taattccaacaaataaatagaagggattcgaagaatcctaacgaccactaacattc 20174770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 21227427 - 21227384
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaa 61  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  21227427 aacaaataaatagaggggattcgaagaatcctaaccactgctaa 21227384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 9916769 - 9916715
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||| ||||||||||| |||||||||||| ||||| |||||||||||    
T  9916769 taattccaacaattaaatagagggaattcgaagaatcctaaccgccgctaacatt 9916715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 9924681 - 9924627
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||| ||||||||||| |||||||||||| ||||| |||||||||||    
T  9924681 taattccaacaattaaatagagggaattcgaagaatcctaaccgccgctaacatt 9924627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 16223994 - 16224048
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  16223994 taattccaacaaatgaatagaggggattcaaagaatcctaaccatcgctaacatt 16224048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 21102127 - 21102181
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| |||||||| | ||||||||||||||||||| || ||||||||||||||    
T  21102127 taattccaacaaatagaaagaggggattcgaagaatcctatccaccgctaacatt 21102181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 18662540 - 18662471
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| |||||||||||||||||| |    ||||||||||| | |||||| ||||||||||||||||||||    
T  18662540 caaataagtaacgtgaattgtttggacgaaacgacaatccttgtggatacgatactctacttatcacttt 18662471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 3329687 - 3329727
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  3329687 aacgacaatccatgtggatacgatactctacttatcacttt 3329727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 3734690 - 3734626
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||||| |  | ||| ||||| ||| |||||| ||||||||||||||||||||    
T  3734690 aagtaacgtgaattgtttggaccaaacaacaattcatgtggatacgatactctacttatcacttt 3734626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 7318343 - 7318303
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  7318343 aacgacaatccatgtggatacgatactctacttatcacttt 7318303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 31493000 - 31492960
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  31493000 aacgacaatccatgtggatacgatactctacttatcacttt 31492960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 39273204 - 39273244
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  39273204 aacgacaatccatatgaatacgatactctacttatcacttt 39273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 9864320 - 9864395
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||| ||||||||  ||||||||||    ||||||||||| | |||||| ||||||||||||||||||||    
T  9864320 tgttctcaaataagtaacgcaaattgtttagacgaaacgacaatccttgtggatatgatactctacttatcacttt 9864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9890429 - 9890374
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||| ||||||| ||||    
T  9890429 taattccaacaaattaatagaggggatttgaagaatcttaaccgccgctaagattc 9890374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 19398664 - 19398715
Alignment:
Q  10 ataattctaacaaataaatagaggggattcgaagaatcataaccaccgctaa 61  Q
    ||||||| |||||||| ||||||| ||||| ||||||| |||||||||||||    
T  19398664 ataattccaacaaatagatagaggagattcaaagaatcctaaccaccgctaa 19398715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 21227308 - 21227209
Alignment:
Q  75 ttatcttttatttaaatgtttttctgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||  |||| | |  ||| ||| |||||||| ||||||  ||||| |||||| ||| ||| | |||| ||||||||||||||||||||    
T  21227308 ttatcttttatttaatggtttatttacttttaaataagtaacgcgaattgcctagttagaacgagaattcatgtagatacgatactctacttatcacttt 21227209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 8938244 - 8938301
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||| ||||||||  ||||| |||||||||||||| |||||  |||||||||||||    
T  8938244 aagtaatgtgaattgcctagttggaacgacaatccatttggatttgatactctactta 8938301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 13418601 - 13418564
Alignment:
Q  137 gacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  13418601 gacaatccctatggatacgatactctacttatcacttt 13418564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 17153183 - 17153224
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcactttc 175  Q
    |||||||||| || |||||| |||||||||||||||||||||    
T  17153183 aacgacaatctatgtggatacgatactctacttatcactttc 17153224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 21885010 - 21885063
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacat 64  Q
    |||||| |||||||| ||| ||||||||| ||||||  ||||||||||||||||    
T  21885010 taattccaacaaatatatataggggattcaaagaattctaaccaccgctaacat 21885063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 8979039 - 8979075
Alignment:
Q  138 acaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  8979039 acaatccatgtggatatgatactctacttatcacttt 8979075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 13759889 - 13759929
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  13759889 aacgacaatccttgtggatatgatactctacttatcacttt 13759929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 17829809 - 17829770
Alignment:
Q  15 tctaacaaataaatagaggggattcgaagaatcataaccac 55  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  17829809 tctaacaaataaatag-ggggattcgaagaatcttaaccac 17829770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 18369009 - 18369049
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  18369009 aacgacaatccctatggatacaatactctacttatcacttt 18369049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 18495604 - 18495556
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||||||  ||||||| ||||  ||||||||||||    
T  18495604 aacaaataaatagaggggatttaaagaatcctaacagccgctaacattc 18495556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 21912333 - 21912389
Alignment:
Q  10 ataattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| |||||||||||| |||| |||||||||||| |||   ||||||||||||    
T  21912333 ataattccaacaaataaatatagggtattcgaagaatcctaaatgccgctaacattc 21912389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 23099981 - 23100021
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  23099981 aacgacaatctatgtggatacgatactctacttatcacttt 23100021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 29263436 - 29263490
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  29263436 taattctaacaattaaatagaggggattcgaagaatcctaaccaccgctaacatt 29263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 32417201 - 32417256
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  32417201 taattccaacaagtaaatagaggggattcgaagaatcctaaccaccactaacattc 32417256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 15544294 - 15544240
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||    
T  15544294 taattctaacaattaaatagaggggattcgaggaatcctaactgccgctaacatt 15544240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 17185555 - 17185493
Alignment:
Q  112 gtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||| |||  ||||||||||| | | |||| ||||||||||||||||||||    
T  17185555 gtaacgtgaattgtttggttgaaacgacaatccctgtagatacgatactctacttatcacttt 17185493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 23265253 - 23265184
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| |||||||||||||||||| |||  || || |||||||||||||| |||| | |||||||||||||    
T  23265253 caaataagtaacgtgaattgtttggttgaaatgaaaatccatatggatacgatattttacttatcacttt 23265184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 27921255 - 27921303
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||| ||||||||||||||||| ||||| | ||||||||||    
T  27921255 aacaaataaataaaggggattcgaagaatcctaacctctgctaacattc 27921303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 15470176 - 15470133
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaa 61  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||    
T  15470176 aacaaataaatagaggggattcaaagaatcctaaccgccgctaa 15470133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 24852166 - 24852237
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatca 170  Q
    |||| ||||| ||||||||||||||||||||    ||| ||||||||| |||||| |||||| |||||||||    
T  24852166 tgttctcaaataagtaacgtgaattgtttagacgaaacaacaatccatgtggatacgatactatacttatca 24852237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 26307857 - 26307802
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||||||| ||||||||| ||||||| ||| ||| ||||| ||||||||||||    
T  26307857 taattctaacatataaatagatgggattcaaagtatcctaaccgccgctaacattc 26307802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 23388870 - 23388907
Alignment:
Q  137 gacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  23388870 gacaatccatgtggatacgatactctacttatcacttt 23388907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 15375911 - 15375947
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatca 170  Q
    ||||||||||| | |||||||||||||||||||||||    
T  15375911 aacgacaatccctgtggataggatactctacttatca 15375947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 17171582 - 17171622
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  17171582 aacgacaatccatgtggatacgatgctctacttatcacttt 17171622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 19004231 - 19004295
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||||| |    || |||||||||| |||||| ||||||| ||||||||||||    
T  19004231 aagtaacgtgaattgtttggacaaaatgacaatccatgtggatacgatactccacttatcacttt 19004295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 23014615 - 23014678
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||  |||||  ||||||||||| || |||||  |||||||||||||||||||    
T  23014615 aagtaacgtgaattgcctagttgaaacgacaatcctta-ggatacaatactctacttatcacttt 23014678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 24245573 - 24245613
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  24245573 aacgacaatccttgtggatacgatactctacttatcacttt 24245613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 24852033 - 24852081
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| |||||||||||||| ||||||| ||||||| |||| |||||    
T  24852033 aacaaatgaatagaggggattcaaagaatcctaaccactgctatcattc 24852081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25070381 - 25070328
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacat 64  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  25070381 taattctaacaaatgaatagagggaattcgaagaatcataaccgccgctaacat 25070328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 8447038 - 8447113
Alignment:
Q  93 tttttctgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttat 168  Q
    ||||| |||||| ||| |||||||| || |||| ||||| |||||||||||||| |||||| |||| |||||||||    
T  8447038 tttttatgtttttaaataagtaacgcgagttgtctagttggaacgacaatccatgtggatacgataatctacttat 8447113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 45621736 - 45621791
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  45621736 taattccaacaaatgaatagaggggattcaaagaatcttaaccgccgctaacattc 45621791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 25070226 - 25070164
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||| |||||||||||||||| ||||| |||||||||||| | |||||  |||||||||||||    
T  25070226 caaataagtaacgtgaattgtctagttggaacgacaatccttgtggatgcgatactctactta 25070164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 29719088 - 29719126
Alignment:
Q  14 ttctaacaaataaatagaggggattcgaagaatcataac 52  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  29719088 ttctaacaaataaatagaggggattcgaagaatcctaac 29719126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 36357335 - 36357289
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacat 64  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||    
T  36357335 aacaaataaatagaggggattcgaagaatcttaaccgccactaacat 36357289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 25618626 - 25618586
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  25618626 aacgacaatccatgtggatatgatactctacttatcacttt 25618586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 32085533 - 32085493
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  32085533 aacgacaatccatgtggatatgatactctacttatcacttt 32085493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 26292574 - 26292620
Alignment:
Q  15 tctaacaaataaatagaggggattcgaagaatcataaccaccgctaa 61  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||||||||    
T  26292574 tctaacaaagaaatataggggattcgaagaatcctaagcaccgctaa 26292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 25939251 - 25939194
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||||||||||||||| |||  ||||| ||||| |||||||| |||||| ||||||    
T  25939251 aagtaacgtgaattgtttggttgaaacgaaaatccttatggatacgatactttactta 25939194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 15339308 - 15339268
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| |||||||||||| |||||||    
T  15339308 aacgacaatccatgtggatatgatactctacttttcacttt 15339268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 17743505 - 17743545
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||| ||||||| |||||| ||||||||||||||||||||    
T  17743505 aacgataatccatgtggatacgatactctacttatcacttt 17743545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 20174664 - 20174704
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  20174664 aacgacaatccatgtggaaatgatactctacttatcacttt 20174704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 25888249 - 25888289
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| |||||| |||||||||||||    
T  25888249 aacgacaatccatgtggatacgatactgtacttatcacttt 25888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 27418460 - 27418396
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||  ||||||||| |||  || || ||||||| |||||| ||||||||||||||||||||    
T  27418460 aagtaacacgaattgtttggttgaaatgataatccatgtggatatgatactctacttatcacttt 27418396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 27869935 - 27869887
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| |||||||||||||| ||||||  ||||| ||||||||||||    
T  27869935 aacaaattaatagaggggattcaaagaattctaaccgccgctaacattc 27869887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 27909124 - 27909188
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||||| | |  ||| | || |||| |||||| ||||||||||||||||||||    
T  27909124 aagtaacgtgaattgtttggatgaaacaataacccatgtggatacgatactctacttatcacttt 27909188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6501414 - 6501462
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6501414 aacaactaaatagaggggattcgaagaatcataaccgccgctaacattc 6501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 24306945 - 24307018
Alignment:
Q  94 ttttctgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||||||  |||| ||||||||||||||| ||||||  ||||||||||| |||| ||| |||||||||||||    
T  24306945 ttttctgttcccaaataagtaacgtgaattgcttagttgaaacgacaatccctatgaatacgatactctactta 24307018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 51473905 - 51473945
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  51473905 aacgacaatccatatggatacgatactctacttatcacttt 51473945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 13345365 - 13345405
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  13345365 aacgacaatccatgtggatatgatactctacttatcacttt 13345405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 17610261 - 17610325
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||||||||||| |    ||||||||||||| |||||| |||||||||||||| |||||    
T  17610261 aagtaacgtgaattgtttggacgaaacgacaatccatgtggatacgatactctacttataacttt 17610325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 24267636 - 24267691
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||| |||||||||||||| ||||||| |||||  |||||||||||    
T  24267636 taattccaacaaattaatagaggggattcaaagaatcctaaccgtcgctaacattc 24267691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 29242611 - 29242549
Alignment:
Q  112 gtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||| ||||||||| | |  ||||||||||  |||||||| ||||||||||||||||||||    
T  29242611 gtaacgcgaattgtttggatgaaacgacaatcactatggatacgatactctacttatcacttt 29242549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 21666640 - 21666677
Alignment:
Q  137 gacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  21666640 gacaatccatgtggatacgatactctacttatcacttt 21666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 9787908 - 9787948
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  9787908 aacgacaatttatatggatacgatactctacttatcacttt 9787948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 12012805 - 12012869
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||| |||| |||||| |  ||||||||| ||| ||||||  |||||||||||||||||||    
T  12012805 aagtaacgcgaatagtttagataaaacgacaattcatgtggatacaatactctacttatcacttt 12012869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 12208671 - 12208631
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  12208671 aacgacaatccatgtggatatgatattctacttatcacttt 12208631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 21449159 - 21449119
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  21449159 aacgacaatccttgtggatacgatactctacttatcacttt 21449119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 19348 - 19301
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  19348 aacaaataaatagaggggattcaaagaatcataaccgccgctaacatt 19301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12269014 - 12268959
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||    
T  12269014 taattctaacaaataaatagaggggatttgaagaatcctaactgccgctaacattc 12268959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 26615247 - 26615311
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||||| ||| ||  ||||||||| ||||||||||  |||||||||||||||||||    
T  26615247 aagtaacgtgaattgcttaattgaaacgacaattcatatggatacaatactctacttatcacttt 26615311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 2637668 - 2637628
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  2637668 aacgacaatccatgtggatacgatactctacttatcacttt 2637628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 17101922 - 17101962
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  17101922 aacgacaatccctatggatacgatactctacttatcacttt 17101962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 31288585 - 31288529
Alignment:
Q  10 ataattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||| |||||||||||||||| || |||| ||||| ||||||||||||    
T  31288585 ataattccaacaattaaatagaggggattcaaataatcctaaccgccgctaacattc 31288529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 5851046 - 5850971
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||| |||||||  | ||||||| |||  |||||||||| || |||||| ||||||||||||||||||||    
T  5851046 tgttctcaaataagtaacacggattgtttggttgaaacgacaatctatgtggatacgatactctacttatcacttt 5850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 15239042 - 15238987
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| |||||||||||||||||||||| ||||||| ||||| || | |||||||    
T  15239042 taattccaacaaataaatagaggggattcaaagaatcctaaccgcctcgaacattc 15238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 24904738 - 24904663
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||| |||||| |||||||||||||    ||||||||||  | |||||| ||||||||||||||||||||    
T  24904738 tgttctcaaataagtaatgtgaattgtttagacgaaacgacaatcactgtggatatgatactctacttatcacttt 24904663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 5851187 - 5851133
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||| || | ||||||||||||||||||| ||||| |||||||||||    
T  5851187 taattccaacaactagacagaggggattcgaagaatcctaaccgccgctaacatt 5851133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 14075677 - 14075623
Alignment:
Q  121 attgtttagttcgaacgacaatccatatggataggatactctacttatcactttc 175  Q
    ||||||| |||  ||||||||||||| |||||| |||| ||||||||||||||||    
T  14075677 attgtttggttgaaacgacaatccatgtggatacgatagtctacttatcactttc 14075623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 17972264 - 17972207
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||||||||||||  ||||| ||| ||||||||||  ||||| |||||||||||||    
T  17972264 aagtaacgtgaattgcctagttagaatgacaatccatgcggatacgatactctactta 17972207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 17509312 - 17509276
Alignment:
Q  138 acaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  17509312 acaatccatgtggatatgatactctacttatcacttt 17509276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 29382390 - 29382430
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  29382390 aacgacaatccctgtggatacgatactctacttatcacttt 29382430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 10107270 - 10107215
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  10107270 taattccaacaaatgaatagaggggattcgaagaatcataaccaccgaaaacattc 10107215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 19900823 - 19900769
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| |||||||||||| ||||||| ||||||||| ||||| |||||||||||    
T  19900823 taattccaacaaataaatataggggatccgaagaatcctaacctccgctaacatt 19900769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 22526609 - 22526555
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||| ||||||||| |||||| ||||||||||||| |||||||||||    
T  22526609 taattccaacaattaaatagagaggattcaaagaatcataaccgccgctaacatt 22526555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 13692698 - 13692738
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  13692698 aacgacaatccatgtggatatgatactctacttatcacttt 13692738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 17216887 - 17216847
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  17216887 aacgacaatccatgtggatatgatactctacttatcacttt 17216847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 20315237 - 20315189
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  20315237 aacaaataaatagaggggattcaaagaatcctaaccgccactaacattc 20315189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 23080573 - 23080519
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||||||||| |||||||| ||||||| ||||| ||||||||||||    
T  23080573 taattccaacaaataaatag-ggggattcaaagaatcttaaccgccgctaacattc 23080519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12761480 - 12761435
Alignment:
Q  20 caaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    ||||| |||||||||||||| ||||||||||||| | |||||||||    
T  12761480 caaatgaatagaggggattcaaagaatcataaccgctgctaacatt 12761435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 7582363 - 7582327
Alignment:
Q  138 acaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  7582363 acaatccatgtggatatgatactctacttatcacttt 7582327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 11521055 - 11521103
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||||||  |||| ||||||| ||||||||||||||||||    
T  11521055 aacaaatgaatagaggatattcaaagaatcctaaccaccgctaacattc 11521103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 11521220 - 11521260
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  11521220 aacgacaatccatgtgtatacgatactctacttatcacttt 11521260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 11935291 - 11935259
Alignment:
Q  23 ataaatagaggggattcgaagaatcataaccac 55  Q
    ||||||||||||||||||||||||| |||||||    
T  11935291 ataaatagaggggattcgaagaatcctaaccac 11935259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 12578295 - 12578335
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  12578295 aacgacaatccatgtggatacgatactctaattatcacttt 12578335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 13908924 - 13908884
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  13908924 aacgacaatccttgtggatacgatactctacttatcacttt 13908884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15049945 - 15049993
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||  |||||||||||||||  ||||||||||||||||||    
T  15049945 aacaaatgaataatggggattcgaagaattctaaccaccgctaacattc 15049993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 15104479 - 15104431
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||  |||||||||||||||  ||||||||||||||||||    
T  15104479 aacaaatgaataatggggattcgaagaattctaaccaccgctaacattc 15104431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 19929704 - 19929744
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  19929704 aacgacaatccatgtggatacgatactctatttatcacttt 19929744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 22526434 - 22526394
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  22526434 aacgacaattcatgtggatacgatactctacttatcacttt 22526394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 24639483 - 24639523
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||| ||||||| |||||| ||||||||||||||||||||    
T  24639483 aacgaaaatccatgtggatacgatactctacttatcacttt 24639523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 28729043 - 28728974
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| |||||||| ||||||||| |||  |||||||||| || |||||| ||||||||||||||||||||    
T  28729043 caaacaagtaacgcgaattgtttggttgaaacgacaatctatgtggatacgatactctacttatcacttt 28728974  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 25756918 - 25756865
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacatt 65  Q
    |||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  25756918 taattccaacaaataaatagagaggattcgaag-atcctaaccaccgctaacatt 25756865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 8557129 - 8557198
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||||||  |||||||||  |  ||||||||||||| |||||| ||||||||||||||||||||    
T  8557129 caaataagtaacgcaaattgtttaaatgaaacgacaatccatgtggatacgatactctacttatcacttt 8557198  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 12805919 - 12805959
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  12805919 aacgacaatccatgtggatatgatactctacttatcacttt 12805959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 17438436 - 17438496
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatca 170  Q
    |||||||||||||||||| |    ||||||||||||| |||||| ||||||||||||||||    
T  17438436 aagtaacgtgaattgtttggacgaaacgacaatccatgtggatatgatactctacttatca 17438496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 23056017 - 23056072
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| |||||||||| | | ||||||||||||||| ||||| ||||||||||||    
T  23056017 taattccaacaaataaaaaaaagggattcgaagaatcctaaccgccgctaacattc 23056072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 821514 - 821583
Alignment:
Q  105 caaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||||| |||||||||||     ||||| ||||||| |||||| ||||||||||||||||||||    
T  821514 caaataagtaacatgaattgtttacacgaaacgaaaatccatgtggatacgatactctacttatcacttt 821583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 21301985 - 21301948
Alignment:
Q  137 gacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  21301985 gacaatccatgtggatacgatactctacttatcacttt 21301948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 21380441 - 21380486
Alignment:
Q  21 aaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||    
T  21380441 aaataaatagaggggattcgaagaatcctaaccgctgttaacattc 21380486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 10744972 - 10744932
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  10744972 aacgacaatccctatggaaacgatactctacttatcacttt 10744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 10917984 - 10917948
Alignment:
Q  138 acaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  10917984 acaatccatgtggatacgatactctacttatcacttt 10917948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 13908255 - 13908295
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||| ||||| |||||||| ||||||||||||||||||||    
T  13908255 aacgataatccctatggatatgatactctacttatcacttt 13908295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 14183232 - 14183280
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||| |||||||||||||| | || |||| ||||||||||||||||||    
T  14183232 aacaattaaatagaggggatccaaaaaatcttaaccaccgctaacattc 14183280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9291846 - 9291894
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  9291846 aacaaataaatagaggggattcaaagaatcctaaccgccgctaacattc 9291894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 28585885 - 28585940
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||||    
T  28585885 taattccaacaattaaatagaggggatttgaagaatcctaaccgccgctaacattc 28585940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 28586025 - 28586095
Alignment:
Q  100 gttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatca 170  Q
    |||| |||| |||||||||| ||||||| |||  ||||||||||||| | |||| ||||||||||||||||    
T  28586025 gtttccaaataagtaacgtggattgttttgttgaaacgacaatccatgtcgatatgatactctacttatca 28586095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 9277129 - 9277177
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  9277129 aacaaataaatagaggggattcaaagaatcctaaccgccgcgaacattc 9277177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 9516855 - 9516815
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  9516855 aacgacaatccatgtggatacgatactctacttatcacttt 9516815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 9726092 - 9726052
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  9726092 aacgacaatccatgtggatacgatactctacttatcacttt 9726052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 23645796 - 23645836
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  23645796 aacgacaatccctatggatacgatactctacttatcacttt 23645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 33655735 - 33655783
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| |||||||||||||||||||||| |||| ||| |||||||||    
T  33655735 aacaaatgaatagaggggattcgaagaatcctaactaccactaacattc 33655783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 7542811 - 7542865
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||    
T  7542811 taattccaacaaatgaatag-ggagattcgaagaatcataaccgccgctaacattc 7542865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9386309 - 9386254
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| |||||||  |||||||| |||||||||||| ||||| ||||||||||||    
T  9386309 taattccaacaaatggatagagggaattcgaagaatcctaaccgccgctaacattc 9386254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9726267 - 9726212
Alignment:
Q  11 taattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||| ||||||||||||||||| |||| ||||||| ||||| || |||||||||    
T  9726267 taattccaacaaataaatagagggaattcaaagaatcctaaccgccactaacattc 9726212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 26215360 - 26215449
Alignment:
Q  76 tatcttttatttaaatgtttttctgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctactta 167  Q
    |||||||||||||  ||||||  |||||| ||| |||||||||||||||  || ||  |||||||||| ||||||||| |||||||||||||    
T  26215360 tatcttttatttatttgtttta-tgtttt-aaataagtaacgtgaattgcctaattgaaacgacaatctatatggatacgatactctactta 26215449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 11177020 - 11176980
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||| |||| |||||| ||||||||||||||||||||    
T  11177020 aacgacaacccatgtggatacgatactctacttatcacttt 11176980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 22410332 - 22410392
Alignment:
Q  110 aagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatca 170  Q
    ||||||||||||||||||   |  ||||||||||| | |||||| ||||||||||||||||    
T  22410332 aagtaacgtgaattgtttgaatgaaacgacaatccctgtggatacgatactctacttatca 22410392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 23143792 - 23143752
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  23143792 aacgacaatccctgtggatatgatactctacttatcacttt 23143752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 222894 - 222942
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    |||||||||||||||| | ||| ||||||||||||| ||||||||||||    
T  222894 aacaaataaatagaggaggttcaaagaatcataaccgccgctaacattc 222942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 18601 - 18649
Alignment:
Q  18 aacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||||||||||| || ||| ||||||||||| | ||||||||||||    
T  18601 aacaaataaatagagtgggttcaaagaatcataatcgccgctaacattc 18649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 15460 - 15534
Alignment:
Q  99 tgttttcaaaaaagtaacgtgaattgtttagttcgaacgacaatccatatggataggatactctacttatcacttt 174  Q
    |||| ||||| |||||||||||||| |||  || |||||||||||||| |||||| |||||||||| ||| |||||    
T  15460 tgttctcaaataagtaacgtgaattatttgatt-gaacgacaatccatgtggatacgatactctacatattacttt 15534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 3598 - 3561
Alignment:
Q  137 gacaatccatatggataggatactctacttatcacttt 174  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  3598 gacaatccatgtggatacgatactctacttatcacttt 3561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 13762 - 13817
Alignment:
Q  10 ataattctaacaaataaatagaggggattcgaagaatcataaccaccgctaacattc 66  Q
    ||||||| ||||||| ||||  |||||| ||||||||| ||||||||||||||||||    
T  13762 ataattccaacaaatgaataacggggat-cgaagaatcctaaccaccgctaacattc 13817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 36024 - 36064
Alignment:
Q  134 aacgacaatccatatggataggatactctacttatcacttt 174  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  36024 aacgacaattcatgtggatacgatactctacttatcacttt 36064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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