View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15334_low_8 (Length: 204)
Name: NF15334_low_8
Description: NF15334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15334_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 11819290 - 11819150
Alignment:
| Q |
49 |
aatgccaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaactagatatatttattgaagtccctcttca |
148 |
Q |
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| T |
11819290 |
aatgctaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaactagatatatttattgaagtccctcttca |
11819191 |
T |
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| Q |
149 |
acgtcccacttccaagactagatataataagcaaatgaact |
189 |
Q |
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| T |
11819190 |
acgtcccacttccaagactagatataataagcaaatgaact |
11819150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 11805336 - 11805193
Alignment:
| Q |
54 |
caatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaact--------agatatatttattgaagtccctct |
145 |
Q |
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| T |
11805336 |
caatcaatggtgaaccatcccatcctcaccaactctgacacaagatctagggggagataaatgcaactcgcaaatgaactagatatattcaagtccctct |
11805237 |
T |
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| Q |
146 |
tcaacgtcccacttccaagactagatataataagcaaatgaact |
189 |
Q |
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| T |
11805236 |
tcaacgacccacttccaaaactagatataataagcaaataaact |
11805193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 11827894 - 11827837
Alignment:
| Q |
114 |
atgcaactagatatatttattgaagtccctcttcaacgtcccacttccaagactagat |
171 |
Q |
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| T |
11827894 |
atgcaactagatatatttattgaagtccctcttcaacgtcccacttccaagactagat |
11827837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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