View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15335_high_6 (Length: 301)
Name: NF15335_high_6
Description: NF15335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15335_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 16594683 - 16594559
Alignment:
| Q |
11 |
ctcaatcctatccatttttatgtttaattcttttgttttgatttggaacatgtggctttgggttttagatatgagttttttagatccagttgtttgggtt |
110 |
Q |
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| T |
16594683 |
ctcaatcctatccatttttatgtttaattcttttgttttgatttggaacatgtggctatgagttttagatatgagtttttta-atccag-tgtttgggtt |
16594586 |
T |
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| Q |
111 |
tcaatacattatgttatgtgtctgaac |
137 |
Q |
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| T |
16594585 |
tcaatacattatgttatgtgtctgaac |
16594559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 16594483 - 16594397
Alignment:
| Q |
213 |
ttcatacatttataaatattaattaagttagttaaataaattgaattttttaagttataattgtagttgcccttagtatacttttgt |
299 |
Q |
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| T |
16594483 |
ttcatacatttataaatattaattaagttagttaaataaattgaattttttaagttataattgtagttgcccttagtatgcttttgt |
16594397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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