View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15335_low_1 (Length: 764)
Name: NF15335_low_1
Description: NF15335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15335_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 411 - 747
Target Start/End: Complemental strand, 33246715 - 33246371
Alignment:
| Q |
411 |
cgatatgaatttgatgatagtccaaatttgttagcgaaaaaagcgcatcgtgggtatagtcagtcctttcactacgtgttacaccaa--------taaat |
502 |
Q |
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| T |
33246715 |
cgatatgattttgatgatagtccaaatttgttagcgaaaaaagcgcatcgtgggtatagtcagtcctttcactacgtgttgcaccaaatcaacaataaat |
33246616 |
T |
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| Q |
503 |
ccaccaccattcacaacaacaacgtattttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcagcgtgcaagattcagcgtcgaaaatg |
602 |
Q |
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| T |
33246615 |
ccaccaccattcacaacaacaacgtattttcaggaacaacaatgatgtcgtcgtgtaattcttctccgtgtgcagcgtgcaagattcagcgtcgaaaatg |
33246516 |
T |
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| Q |
603 |
cactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagtta |
702 |
Q |
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| T |
33246515 |
cactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtccacaaagtcttcggtgctagcaacgtggcaaagtta |
33246416 |
T |
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| Q |
703 |
ctcaacgaggttgatgcttctcaacgtgaagatgctgttaagtct |
747 |
Q |
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| T |
33246415 |
ctcaacgaggttgatgcttctcaacgtgaagatgctgttaagtct |
33246371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 33246903 - 33246815
Alignment:
| Q |
188 |
gtataaaatatcaatcaatctatttcaataaaataatgacatagtaggatttgattgccgaatgaaccaaccaggtaatgaatgataatgttc |
280 |
Q |
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| T |
33246903 |
gtataaaatatcaatcaatctatttcaataaaataatgacatagtaagatttgattgcccaat----aaaacaggtaatgaatgataatgttc |
33246815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 33247107 - 33247050
Alignment:
| Q |
25 |
accaattcaaatgtgtttatagtccaaatatattaatttttgttgcttttactttttt |
82 |
Q |
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| T |
33247107 |
accaattcaaatgtgtttttagtttaaatatattaatttgtgttgattcaactttttt |
33247050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 568 - 699
Target Start/End: Original strand, 6650105 - 6650236
Alignment:
| Q |
568 |
ccgtgtgcagcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtcc |
667 |
Q |
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| T |
6650105 |
ccgtgtgcggcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaagatttgcatatgtac |
6650204 |
T |
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| Q |
668 |
acaaagtcttcggtgctagcaacgtggcaaag |
699 |
Q |
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| T |
6650205 |
acaaagtttttggagctagtaacgtggcaaag |
6650236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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