View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15335_low_3 (Length: 348)
Name: NF15335_low_3
Description: NF15335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15335_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 8420851 - 8420540
Alignment:
| Q |
1 |
tctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttgaacaaaatcagaataataaagaaatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
8420851 |
tctcttcctaattgtgtgttatc-------aaattattataggtagatacatatacaaataaccgtcccttttgaacaaaatcagaataataaagaaatg |
8420759 |
T |
|
| Q |
101 |
aaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggattccttatctttaggaaggcatgctaa |
200 |
Q |
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||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8420758 |
aaaactaggtttattttaattgagtc----actcatagcataactataactataggaagtagttgagg-tggattccttatctttaggaaggcatgctaa |
8420664 |
T |
|
| Q |
201 |
taagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagtagaataaattgagtggaa |
300 |
Q |
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| T |
8420663 |
taagtaaacaacagcaacgtgattaataggagagtagtgttttgactcagcaacaaaaggagacactcatagtcaaataagtagaataaattgagtggaa |
8420564 |
T |
|
| Q |
301 |
ataggaatggagtaaccaccacaa |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
8420563 |
ataggaatggagtaaccaccacaa |
8420540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 105 - 328
Target Start/End: Original strand, 49171545 - 49171767
Alignment:
| Q |
105 |
ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagggtggattccttatctttaggaaggcatgctaataag |
204 |
Q |
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| T |
49171545 |
ctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgagg-tggattccttatctttaggaaggcatgctaataag |
49171643 |
T |
|
| Q |
205 |
taaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagtagaataaattgagtggaaatag |
304 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171644 |
taaataagagcaacgtgactaataggagagtagtgttttaactcagcaacaaaaggagtcactcatagtcaaataagtagaataaattgagtggaaatag |
49171743 |
T |
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| Q |
305 |
gaatggagtaaccaccacaacgtg |
328 |
Q |
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|||||||||||||||||||||||| |
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| T |
49171744 |
gaatggagtaaccaccacaacgtg |
49171767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 21492340 - 21492622
Alignment:
| Q |
1 |
tctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttgaacaaaa-tcagaataataaagaaat |
99 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||| |||||| || || ||||| || |||||||||||| |||||| |||||||||| |
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| T |
21492340 |
tctcttcctaattgtatgttatccctaggaaaattattatagctagatatatg----aaaaaccgcccctcttgaacaaaaatcagaaaaataaagaaaa |
21492435 |
T |
|
| Q |
100 |
gaaatctaggtttattttaattgagtcgatcactcgtagcataactataactataggaagtagttgag--------ggtggattccttatctttaggaag |
191 |
Q |
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|||| ||| |||||||||||||||| | |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
21492436 |
gaaaactaagtttattttaattgagcc----actcatagcataactata------ggaggtagttgaaccatgggaggtggattccttatctttaggaag |
21492525 |
T |
|
| Q |
192 |
gcatgctaataagtaaacaagagcaacgtgactaatatgagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagtagaata |
288 |
Q |
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|||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
21492526 |
gcatactaataagtaaacaacagcaacgtgactaacaagagagtagtgttttgactcagcaacaaaaggggacactcatggtcaaataagtagaata |
21492622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 49171264 - 49171361
Alignment:
| Q |
1 |
tctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttgaacaaaatcagaataataaagaaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171264 |
tctcttcctaattgtgtgttatccctaagaaaattattataggtagatacatatacaaataaccgtccttcttgaacaaaatcagaataataaagaaa |
49171361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 45232677 - 45232599
Alignment:
| Q |
44 |
tagatacatatacaaataaccgtccttcttgaacaaaatcag-aataataaagaaatgaaatctaggtttattttaatt |
121 |
Q |
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||||||| |||| | |||||||||| |||||||||||||||| || |||||||||| |||| ||| |||| |||||||| |
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| T |
45232677 |
tagatacgtatatatataaccgtccctcttgaacaaaatcagcaaaaataaagaaaagaaaactatgtttgttttaatt |
45232599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 8730306 - 8730253
Alignment:
| Q |
230 |
gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta |
283 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
8730306 |
gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta |
8730253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 9082193 - 9082140
Alignment:
| Q |
230 |
gagagtagtgttttgactcagcaacaaaaggagtcactcatagtcaaataagta |
283 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
9082193 |
gagagtagtgttttgactcagcaacaaaagagaacactgatagtcaaataagta |
9082140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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