View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15335_low_5 (Length: 264)

Name: NF15335_low_5
Description: NF15335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15335_low_5
NF15335_low_5
[»] chr7 (9 HSPs)
chr7 (84-175)||(48604629-48604719)
chr7 (138-172)||(18803837-18803871)
chr7 (137-170)||(18564273-18564306)
chr7 (137-170)||(24463710-24463743)
chr7 (136-172)||(2688121-2688157)
chr7 (137-169)||(5470422-5470454)
chr7 (138-170)||(12229665-12229697)
chr7 (139-171)||(28036594-28036626)
chr7 (134-170)||(47303335-47303371)
[»] chr1 (8 HSPs)
chr1 (13-80)||(14798092-14798159)
chr1 (13-80)||(14806966-14807033)
chr1 (133-172)||(17337964-17338003)
chr1 (136-172)||(14422619-14422655)
chr1 (139-171)||(33417507-33417539)
chr1 (135-171)||(34941588-34941624)
chr1 (137-169)||(37848167-37848199)
chr1 (138-170)||(51680854-51680886)
[»] chr8 (7 HSPs)
chr8 (13-83)||(33173359-33173429)
chr8 (13-80)||(35891204-35891271)
chr8 (137-172)||(2289030-2289065)
chr8 (137-170)||(1030767-1030800)
chr8 (138-171)||(13175901-13175934)
chr8 (137-170)||(38389898-38389931)
chr8 (136-172)||(14395773-14395809)
[»] chr5 (5 HSPs)
chr5 (13-80)||(32151453-32151523)
chr5 (140-169)||(15683406-15683435)
chr5 (130-170)||(9926384-9926424)
chr5 (133-169)||(21063910-21063946)
chr5 (136-172)||(39731329-39731365)
[»] chr3 (13 HSPs)
chr3 (138-172)||(30477134-30477168)
chr3 (133-170)||(43887184-43887221)
chr3 (137-172)||(7923254-7923289)
chr3 (135-172)||(33805955-33805992)
chr3 (137-170)||(46835639-46835672)
chr3 (137-170)||(47742725-47742758)
chr3 (133-170)||(54851830-54851867)
chr3 (137-169)||(6134603-6134635)
chr3 (138-170)||(29458828-29458860)
chr3 (136-172)||(30577697-30577733)
chr3 (136-172)||(35460069-35460105)
chr3 (136-172)||(47806440-47806476)
chr3 (129-169)||(50940111-50940151)
[»] chr4 (6 HSPs)
chr4 (135-172)||(29372207-29372244)
chr4 (133-172)||(30188089-30188128)
chr4 (135-170)||(52021204-52021239)
chr4 (137-170)||(51042241-51042274)
chr4 (136-172)||(5497119-5497155)
chr4 (130-170)||(47171508-47171548)
[»] chr2 (6 HSPs)
chr2 (137-172)||(37804787-37804822)
chr2 (132-170)||(10313475-10313513)
chr2 (124-172)||(6376741-6376789)
chr2 (137-169)||(8077070-8077102)
chr2 (137-169)||(10590281-10590313)
chr2 (135-171)||(10590747-10590783)
[»] chr6 (2 HSPs)
chr6 (135-169)||(34875822-34875856)
chr6 (136-172)||(13691346-13691382)
[»] scaffold0508 (1 HSPs)
scaffold0508 (136-172)||(6737-6773)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 48604629 - 48604719
Alignment:
Q  84 cctgaaacatgaccacattactaaatagacacatttcatgtttttaaataataagggttaaatatgtttttgatcattataaatatatcgac 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48604629 cctgaaacatgaccacattactaaatagacacatttcatgtttttaaataataagggttaaatatgttttt-atcattataaatatatcgac 48604719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 18803871 - 18803837
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||||||||||||| |||||||||||||    
T  18803871 gggttaaatatgtttttgatccttataaatatatc 18803837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 18564273 - 18564306
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  18564273 agggttaaatatgtttttgatccttataaatata 18564306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 24463743 - 24463710
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  24463743 agggttaaatatgtttttgatccttataaatata 24463710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 2688121 - 2688157
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2688121 aagggttaaatatgtttttgatccctataaatatatc 2688157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 5470422 - 5470454
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||| ||||||||||    
T  5470422 agggttaaatatgtttttgatccttataaatat 5470454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 12229665 - 12229697
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatata 170  Q
    ||||||||||||||||||||| |||||||||||    
T  12229665 gggttaaatatgtttttgatccttataaatata 12229697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 28036626 - 28036594
Alignment:
Q  139 ggttaaatatgtttttgatcattataaatatat 171  Q
    |||||||||||||||||||| ||||||||||||    
T  28036626 ggttaaatatgtttttgatccttataaatatat 28036594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 47303371 - 47303335
Alignment:
Q  134 ataagggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||||||  ||||||||||    
T  47303371 ataagggttaaatatgtttttgatccctataaatata 47303335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 14798092 - 14798159
Alignment:
Q  13 ataatactatatataaaggaaacttggggggtaccatggcacccatgggtccccaagtagatccgcca 80  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  14798092 ataatactatatataaaggaaacttggggggtaccatggctcccataggtccccaagtagatccgcca 14798159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 14806966 - 14807033
Alignment:
Q  13 ataatactatatataaaggaaacttggggggtaccatggcacccatgggtccccaagtagatccgcca 80  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  14806966 ataatactatatataaaggaaacttggggggtaccatggctcccataggtccccaagtagatccgcca 14807033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 17337964 - 17338003
Alignment:
Q  133 aataagggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  17337964 aataagggttaaatatgtttttggtccttataaatatatc 17338003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 14422619 - 14422655
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||  ||||||||||||    
T  14422619 aagggttaaatatgtttttgatccctataaatatatc 14422655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 33417507 - 33417539
Alignment:
Q  139 ggttaaatatgtttttgatcattataaatatat 171  Q
    |||||||||||||||| ||||||||||||||||    
T  33417507 ggttaaatatgtttttaatcattataaatatat 33417539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 34941624 - 34941588
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatatat 171  Q
    ||||||||||||||||||||||||  |||||||||||    
T  34941624 taagggttaaatatgtttttgatctctataaatatat 34941588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 37848199 - 37848167
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||| ||||||||||    
T  37848199 agggttaaatatgtttttgatccttataaatat 37848167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 51680854 - 51680886
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatata 170  Q
    ||||||||||||||||||||| |||||||||||    
T  51680854 gggttaaatatgtttttgatccttataaatata 51680886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 33173429 - 33173359
Alignment:
Q  13 ataatactatatataaaggaaacttggggggtaccatggcacccatgggtccccaagtagatccgccattg 83  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  33173429 ataatactatatataaaggaaacttggggggtaccatgactcccatgggttcccaagtagatccgccattg 33173359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 35891204 - 35891271
Alignment:
Q  13 ataatactatatataaaggaaacttggggggtaccatggcacccatgggtccccaagtagatccgcca 80  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  35891204 ataatactatatataaaggaaacttggggggtaccatgactcccatgggtctccaagtagatccgcca 35891271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 2289065 - 2289030
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||| |||||||||||||    
T  2289065 agggttaaatatgtttttgatccttataaatatatc 2289030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 1030767 - 1030800
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  1030767 agggttaaatatgtttttgatccttataaatata 1030800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 13175901 - 13175934
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatatat 171  Q
    ||||||||||||||||||||| ||||||||||||    
T  13175901 gggttaaatatgtttttgatccttataaatatat 13175934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 38389931 - 38389898
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  38389931 agggttaaatatgtttttgatccttataaatata 38389898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 14395809 - 14395773
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||  ||||||||||||    
T  14395809 aagggttaaatatgtttttgatccctataaatatatc 14395773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 32151453 - 32151523
Alignment:
Q  13 ataatactatatataaaggaaacttgggggg---taccatggcacccatgggtccccaagtagatccgcca 80  Q
    |||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||    
T  32151453 ataatactatatataaaggaaacttggggggtactaccatggctcccatgggtccccaagtagatccgcca 32151523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 15683406 - 15683435
Alignment:
Q  140 gttaaatatgtttttgatcattataaatat 169  Q
    ||||||||||||||||||||||||||||||    
T  15683406 gttaaatatgtttttgatcattataaatat 15683435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 9926424 - 9926384
Alignment:
Q  130 aataataagggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  9926424 aataataagggttaaatatgtttttggtccctataaatata 9926384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 21063946 - 21063910
Alignment:
Q  133 aataagggttaaatatgtttttgatcattataaatat 169  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  21063946 aataagggttaaatatgtttttggtcactataaatat 21063910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 39731365 - 39731329
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||| || |||||||||||||    
T  39731365 aagggttaaatatgtttttggtccttataaatatatc 39731329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 30477134 - 30477168
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||||||||||||||    
T  30477134 gggttaaatatgtttttgatcattataaatatatc 30477168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 43887221 - 43887184
Alignment:
Q  133 aataagggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43887221 aataagggttaaatatgtttttgatccttataaatata 43887184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 7923289 - 7923254
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||| |||||||||||||    
T  7923289 agggttaaatatgtttttgatccttataaatatatc 7923254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 33805955 - 33805992
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  33805955 taagggttaaatatgtttttgatccctataaatatatc 33805992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 46835639 - 46835672
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  46835639 agggttaaatatgtttttgatccttataaatata 46835672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 47742725 - 47742758
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  47742725 agggttaaatatgtttttgatctttataaatata 47742758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 54851867 - 54851830
Alignment:
Q  133 aataagggttaaatatgtttttgatcattataaatata 170  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  54851867 aataagggttaaatatgtttttgatccctataaatata 54851830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 6134603 - 6134635
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||| ||||||||||    
T  6134603 agggttaaatatgtttttgatccttataaatat 6134635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 29458860 - 29458828
Alignment:
Q  138 gggttaaatatgtttttgatcattataaatata 170  Q
    ||||||||||||||||||||| |||||||||||    
T  29458860 gggttaaatatgtttttgatccttataaatata 29458828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30577733 - 30577697
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||  ||||||||||||    
T  30577733 aagggttaaatatgtttttgatctctataaatatatc 30577697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 35460069 - 35460105
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||| |||| |||||||||||||    
T  35460069 aagggttaaatatgttttggatccttataaatatatc 35460105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 47806476 - 47806440
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  47806476 aagggttaaatttgtttttgatccttataaatatatc 47806440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 50940111 - 50940151
Alignment:
Q  129 aaataataagggttaaatatgtttttgatcattataaatat 169  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  50940111 aaataataagggttatatatgtttttgatccctataaatat 50940151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 29372207 - 29372244
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29372207 taagggttaaatatgtttttgatctttataaatatatc 29372244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 30188089 - 30188128
Alignment:
Q  133 aataagggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  30188089 aataagggttaaatatgtttttgatctctataaatatatc 30188128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 52021204 - 52021239
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||||| |||||||||||    
T  52021204 taagggttaaatatgtttttgatccttataaatata 52021239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 51042241 - 51042274
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatata 170  Q
    |||||||||||||||||||||| |||||||||||    
T  51042241 agggttaaatatgtttttgatctttataaatata 51042274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 5497155 - 5497119
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||||||  ||||||||||||    
T  5497155 aagggttaaatatgtttttgatccctataaatatatc 5497119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 47171548 - 47171508
Alignment:
Q  130 aataataagggttaaatatgtttttgatcattataaatata 170  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  47171548 aataataagggttaaatatgtttttaatccctataaatata 47171508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 37804787 - 37804822
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||| |||||||||||||||||    
T  37804787 agggttaaatatgtttttaatcattataaatatatc 37804822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 10313513 - 10313475
Alignment:
Q  132 taataagggttaaatatgtttttgatcattataaatata 170  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  10313513 taatatgggttaaatatgtttttgatccttataaatata 10313475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 6376789 - 6376741
Alignment:
Q  124 tttttaaataataagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||  ||| ||||||||||||||||||| || |||||||||||||    
T  6376789 tttttaataaattagggttaaatatgtttttggtccttataaatatatc 6376741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 8077102 - 8077070
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||| ||||||||||    
T  8077102 agggttaaatatgtttttgatctttataaatat 8077070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 10590281 - 10590313
Alignment:
Q  137 agggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||| ||||||||||    
T  10590281 agggttaaatatgtttttgatccttataaatat 10590313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 10590783 - 10590747
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatatat 171  Q
    ||||||||||||||||||||| || ||||||||||||    
T  10590783 taagggttaaatatgtttttggtccttataaatatat 10590747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 34875822 - 34875856
Alignment:
Q  135 taagggttaaatatgtttttgatcattataaatat 169  Q
    |||||||||||||||||||||||| ||||||||||    
T  34875822 taagggttaaatatgtttttgatccttataaatat 34875856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 13691346 - 13691382
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  13691346 aagggttaaatatatttttgatccttataaatatatc 13691382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 6773 - 6737
Alignment:
Q  136 aagggttaaatatgtttttgatcattataaatatatc 172  Q
    |||||||||||||||||||| || |||||||||||||    
T  6773 aagggttaaatatgtttttggtccttataaatatatc 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University