View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15336_high_1 (Length: 580)
Name: NF15336_high_1
Description: NF15336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15336_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 42 - 565
Target Start/End: Original strand, 30339867 - 30340383
Alignment:
| Q |
42 |
catatgtttacaaatatgacacctagagatcatgaatgtatagtaatagtatacgtatatatattgtagcatctatactgtattgagatagtatgagttg |
141 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30339867 |
catatgtttacaaatatgccacctagagatcatgaatgtatagtaatagtata------tagattgtagcatctatactgtattgagatagtatgagttg |
30339960 |
T |
|
| Q |
142 |
gggtgaacatggttatatgttaagcagaatgctaattttcctttagaatgagtctatgatagtgaaaggttagtactaatactatgtctaaaattgtcat |
241 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30339961 |
gggtgaacatggttatatgttaaacagaatgctaattttcctttagaatgagtctatgatagtgaaaggttagtactaatactatgtctaaaattgtcat |
30340060 |
T |
|
| Q |
242 |
ttcataattattaagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattgtg |
341 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
30340061 |
ttcaaaattattaagaatggattgttgtttatgcttgattgctccttttgttccttatagatcacaattgtattagtttggtctctaaattctaattgtg |
30340160 |
T |
|
| Q |
342 |
agagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaaat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30340161 |
agagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatgcgcttccaaattcctctttgattcatgattctaatcaaaat |
30340260 |
T |
|
| Q |
442 |
tgtgatactttaattttcatgctccctctaattgttccttcnnnnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagaccaa |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30340261 |
tgtgatactttaattttcatgctccctctaattgttccttc-aaaaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagaccaa |
30340359 |
T |
|
| Q |
542 |
gtaagcaagcaccatagacctatg |
565 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30340360 |
gtaagcaagcaccatagacctatg |
30340383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 240 - 565
Target Start/End: Original strand, 23915862 - 23916184
Alignment:
| Q |
240 |
atttcataattattaagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattg |
339 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
23915862 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttttgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
23915961 |
T |
|
| Q |
340 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23915962 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
23916061 |
T |
|
| Q |
440 |
attgtgatactttaattttcatgctccctctaattgttccttcnnnnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagacc |
539 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23916062 |
gttgtgatactttaattttcaagctccctctaattgttccttc---aaaaaaaaaaaatgctccctctaattgtgaatgcgtgtatggactttttagacc |
23916158 |
T |
|
| Q |
540 |
aagtaagcaagcaccatagacctatg |
565 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23916159 |
aagtaagcaagcaccatagacctatg |
23916184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 240 - 565
Target Start/End: Complemental strand, 18989660 - 18989337
Alignment:
| Q |
240 |
atttcataattattaagaatagattgttgtttatgcttgattgctccttttgttccttatagatcacaactgtattagtttggtatctaaattctaattg |
339 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
18989660 |
atttcataattattaagaatggattgttgtttatgcttgatttctccttctgttccttatatatcacaattgtattagtttggtctctaaattctaatcg |
18989561 |
T |
|
| Q |
340 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttcgaatcggttgaaatacacttccaaattcctctttgattcatgattctaatcaaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18989560 |
tgagagttgagtccctgttttgatctcctggtagtgttattttttccaatcggttgaaataaacttccaaattcctctttgattcatgattctaataaaa |
18989461 |
T |
|
| Q |
440 |
attgtgatactttaattttcatgctccctctaattgttccttcnnnnnnnnnnnnnnntgctccctctaattgtgaatgtgtgtatggactttttagacc |
539 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18989460 |
gttttgatactttaattttcaagctccctctaattgttccttcaaaaaaaaaaaaaa--gctccctctaattgtgaatgcgtgtatggactttttagacc |
18989363 |
T |
|
| Q |
540 |
aagtaagcaagcaccatagacctatg |
565 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
18989362 |
aagtaagcaagcaccatagacctatg |
18989337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 123 - 381
Target Start/End: Complemental strand, 54435135 - 54434868
Alignment:
| Q |
123 |
attgagatagtatgagttggggtgaacatggttatat-gttaagcagaatgctaattttcctttagaatgagtctatgat---agtgaaaggttagtact |
218 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
54435135 |
attgagatagtgtgagttggggtgaagatggttaacttgttaagcagaatgctaattttcctttagaatgagtctatgatgatagtgaaaggttagtaat |
54435036 |
T |
|
| Q |
219 |
aatactatgtctaaaattgtcatttcataattattaagaatagattgttgtttatg-cttgattgctccttttgttccttatagatcacaactgtattag |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
54435035 |
aatactatgtctaaaattgtcattccataattattaagaatggatttttgtttatgttttgattgtaccttttgttccttatatatcacaattgtattag |
54434936 |
T |
|
| Q |
318 |
tttggtatctaaattctaa----ttgtgagagttgagtccctgttttgatctcctggtagtgttattt |
381 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
54434935 |
tttggtctctaaattctaattatttatgagagttgagtccctattttgatctcctggtactgttattt |
54434868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 54434869 - 54434804
Alignment:
| Q |
411 |
ttcctctttgattcatgattctaatcaaaattgtgatactttaattttcatgctccctctaattgtt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54434869 |
ttcctctttgattcatgattctaatcaag-ttgtgatactttaattttcatgctccctctaattgtt |
54434804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 565
Target Start/End: Complemental strand, 54434820 - 54434751
Alignment:
| Q |
498 |
tgctccctctaattgtgaatgtgtgtat--ggactttttagaccaagtaagcaagcaccatagacctatg |
565 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54434820 |
tgctccctctaattgttgatgcgtgtatatggactttttagaccaagtaagcaagcaccttagacctatg |
54434751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University