View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15336_high_3 (Length: 274)
Name: NF15336_high_3
Description: NF15336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15336_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 23398547 - 23398820
Alignment:
| Q |
1 |
ccagaacaatgtgatattttattgcgagatgtgactatgaaggtatattcttatgtctgcatactctttggtattaacgtggtatgattaattataatta |
100 |
Q |
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| T |
23398547 |
ccagaacaatgtgatattttattgcgagatgtgactatgaaggtatattcttatgtctgcatactctttggtattaacgtggtatgattaattataatta |
23398646 |
T |
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| Q |
101 |
aagatgtaagtgccatttgatttcttttaggtacggtatactataattttggtactattcaatcaattttaggccgagacacatgagagatcttgatatt |
200 |
Q |
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| T |
23398647 |
aagatgtaagtgccatttgatttcttttaggtacggtatactataattttggtactattcaatcaattttaggccgagacacatgagagatcttgatatt |
23398746 |
T |
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| Q |
201 |
gattaataatttaaccaaataaatcatttaaaaataacgagcattctatctgaactaacattttcttgtaaaat |
274 |
Q |
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| T |
23398747 |
gattaataatttaaccaaataaatcatttaaaaataacgagcattctatctgaactaacattttcttgtaaaat |
23398820 |
T |
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