View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15336_low_1 (Length: 1186)
Name: NF15336_low_1
Description: NF15336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15336_low_1 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0191 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 64 - 612
Target Start/End: Complemental strand, 20565 - 20011
Alignment:
| Q |
64 |
agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctc--------acctt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20565 |
agattctgaaaatatttctattctcaaatttcacccatcatagattcaaagttaagccaagactatatcaattctaaaggtcctctcttgttctcacctt |
20466 |
T |
|
| Q |
156 |
ttcttcaaataacattagacccatttcgatcaaatgtcattttgttctatataaaatgtaaaatttacattggaagtacaaaagtaaatgatgttgacac |
255 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
20465 |
ttcgtcaagtaacattacacccatttcgatcaaatgt--ttgcattctatataaaatgcaaaattcacattggaagtacaaaaataaaagatgttgacac |
20368 |
T |
|
| Q |
256 |
caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatgtctccatgataca |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20367 |
caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatctctccatgataca |
20268 |
T |
|
| Q |
356 |
aatatccatagtccaacgttactaatttgatgagacctatgaaatgattgttcattcaatacataaaaagatacggttagaaagatatatttaccgtcat |
455 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20267 |
aatatccatagtccaatgttactaatttgatgagacctatgaaatgattgttcattcaatacatgcaaagatacggttagaaagatatatttaccgtcat |
20168 |
T |
|
| Q |
456 |
taaataacaattcatacataaacgaaagattannnnnnngagtgatccgctgaagattctctaaagatcatttgggtttgcaaaccattcaaacaaacca |
555 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20167 |
taaataacaagtcatacttaaacggaagattattcttttgagtgatccgctgaagattccctaaagatcatttgggtctgcaaaccattcaaacaaacca |
20068 |
T |
|
| Q |
556 |
aaattgaatattatgttaatgaacaggttactacttagaatcatagtatcatcgaga |
612 |
Q |
| |
|
|||||||||| |||||||||||| | || ||||||||||||||||||||||| |||| |
|
|
| T |
20067 |
aaattgaatactatgttaatgaataagtaactacttagaatcatagtatcattgaga |
20011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 619 - 1171
Target Start/End: Complemental strand, 28699590 - 28699045
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
718 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699590 |
tgttgactggatgactatgaaaccacta-ttttaagttcctaatctttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
28699492 |
T |
|
| Q |
719 |
ttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaa |
818 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
28699491 |
ttgttaccagttttttaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctttatgtataaatatgat-ggttatcattcaa |
28699393 |
T |
|
| Q |
819 |
tagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaacaaattggtatctagagccttcttcttggaggg |
918 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28699392 |
taaaaatattccttttatgttgttcacataacatatt-ttttccacgttaaacctttctatatccaacagattggtatctagagccttcttcttagaggg |
28699294 |
T |
|
| Q |
919 |
actt---------gtgagtgaaacccaccataaaggcttaaacactat-tttcaattcatcaaacagatggattctgaaacatcctacaaagccctacca |
1008 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699293 |
acttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactatctttcaatttatcaatcagatggattctgaaacatcctacaaagccctacca |
28699194 |
T |
|
| Q |
1009 |
ttacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctattgaggaggactacg |
1108 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28699193 |
ttacttgtgtttgatggtgaaaactatcatatatgggcagcaagaa------------tagaggcaaatgacctttgggaagctgttgaggaggactaca |
28699106 |
T |
|
| Q |
1109 |
aagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28699105 |
aagttcttcctttg--tcagacaatccaacaatggctcagataaataatcacaaggaaaggaa |
28699045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 619 - 888
Target Start/End: Complemental strand, 28697323 - 28697057
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
718 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697323 |
tgttgactggatgactatgaaactact-gttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
28697225 |
T |
|
| Q |
719 |
ttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaa |
818 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
28697224 |
ttgttaccagttttttaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctttatgtataaatatgat-ggttatcattcaa |
28697126 |
T |
|
| Q |
819 |
tagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaacaa |
888 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28697125 |
taaaaatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaa |
28697057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 806 - 1171
Target Start/End: Original strand, 626171 - 626542
Alignment:
| Q |
806 |
ggttatcattcaatagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaacaaattggtatctagagcct |
905 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
626171 |
ggttatcattcaataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaatctttctatatccaacagattggtatctagagcct |
626269 |
T |
|
| Q |
906 |
tcttcttggagggacttgtga---------gtgaaacccaccataaaggcttaaacactattttcaattcatcaaacagatggattctgaaacatcctac |
996 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
626270 |
tctccttggagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactattttcaattcatcaatcagatggattctgaaacatcctac |
626369 |
T |
|
| Q |
997 |
aaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctattg |
1096 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
626370 |
aaagccctaccattatctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttg |
626469 |
T |
|
| Q |
1097 |
aggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626470 |
aggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
626542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 619 - 889
Target Start/End: Original strand, 628279 - 628548
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctat-tatctttt-tatgttattgttaggaactctctgatatgctct |
716 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
628279 |
tgttgactggatgactatgaaactacg-gttttaagttcctaatttttaggatctaagtatcttttttatgttattgttaggaactctctgatatgctct |
628377 |
T |
|
| Q |
717 |
atttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattc |
816 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
628378 |
atttgttaccagttttttaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttcttgatgtataaatatgat-ggttatcattc |
628476 |
T |
|
| Q |
817 |
aatagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaacaaa |
889 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
628477 |
aataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaaa |
628548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 882 - 1171
Target Start/End: Original strand, 29867721 - 29868018
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttgtgagtgaa---------acccaccataaaggcttaaacactat-tttcaattcatcaa |
971 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
29867721 |
ccaacagattggtatctagagccttcttcttagagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactacctttcatttcatcaa |
29867820 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
29867821 |
tcagatggattctgaaacatcctacaaagccccacctttacctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagag |
29867920 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29867921 |
gcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
29868018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 619 - 891
Target Start/End: Complemental strand, 33715820 - 33715550
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
718 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33715820 |
tgttgactagatgactatgaaactact-gttttaagttcctaatttgtaggatctattatctttttatgttattgttagaaactctctgatatgctctat |
33715722 |
T |
|
| Q |
719 |
ttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaa |
818 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33715721 |
ttcataccaattttttaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgat-ggttatcattcaa |
33715623 |
T |
|
| Q |
819 |
tagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaacaaatt |
891 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33715622 |
taaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctataaccaacaaatt |
33715550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 1050 - 1171
Target Start/End: Complemental strand, 33721950 - 33721831
Alignment:
| Q |
1050 |
aaggatggaggcgtatttagaggcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcaga |
1149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33721950 |
aaggatggaggcgtatttagaggcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcaga |
33721853 |
T |
|
| Q |
1150 |
taaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
33721852 |
taacaaatcacaaggaaaggaa |
33721831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 623 - 887
Target Start/End: Original strand, 27712040 - 27712301
Alignment:
| Q |
623 |
gactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctatttat |
722 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |
|
|
| T |
27712040 |
gactggatgactatgaaactact-gttttaagttcctaaattttaggatctattatctttttatgttattattaggcactctctgatatgctctatttgt |
27712138 |
T |
|
| Q |
723 |
taccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaataga |
822 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
27712139 |
taccagttttttaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctttatgtataaatatgat-ggttatcattcaataaa |
27712237 |
T |
|
| Q |
823 |
aatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaaca |
887 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27712238 |
aatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaaca |
27712301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 10440297 - 10440399
Alignment:
| Q |
64 |
agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctcaccttttcttcaa |
163 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10440297 |
agattctaaaaatatttctattctcaaatttcacccatcatagattcaaaattaagccaagactatatcaattctaaaggtcctctcaccttttcttcaa |
10440396 |
T |
|
| Q |
164 |
ata |
166 |
Q |
| |
|
||| |
|
|
| T |
10440397 |
ata |
10440399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 10440542 - 10440607
Alignment:
| Q |
394 |
atgaaatgattgttcattcaatacataaaaagatacggttagaaagatatatttaccgtcattaaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10440542 |
atgaaatgattgttcattcaatacatgaaaagatacggttagaaagatatatttaccgtcattaaa |
10440607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 10440426 - 10440466
Alignment:
| Q |
259 |
caaaaaatatgaaccgatctaatcaacatcctctattatca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10440426 |
caaaaaatatgaaccgatctaatcaacatcctctattatca |
10440466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10440501 - 10440544
Alignment:
| Q |
297 |
tcatgcttcatgattcctgtacaacaatcaaacacaacattcaatg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10440501 |
tcatgcttcatgattcctgtacaacaatcaa--acaacattcaatg |
10440544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 619 - 884
Target Start/End: Original strand, 28180305 - 28180567
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
718 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28180305 |
tgttgactggatgactatgaaactact-gatttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
28180403 |
T |
|
| Q |
719 |
ttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaa |
818 |
Q |
| |
|
|| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
28180404 |
ttgttaccagctttttaggtatttagttttcaaatagtagtttctttatgcattattttaggcttttctttatgtataaatatgat-ggttatcattcaa |
28180502 |
T |
|
| Q |
819 |
tagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatcca |
884 |
Q |
| |
|
|| || ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
28180503 |
taaaattatcccttttatgctgttcacataacatatt-ttttccatgttaaacctttctatatcca |
28180567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 882 - 1171
Target Start/End: Complemental strand, 20786628 - 20786331
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttgtgagtgaa---------acccaccataaaggcttaaacactat-tttcaattcatcaa |
971 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
20786628 |
ccaacagattggtatctagagccttcttcttagagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactacctttcatttcatcaa |
20786529 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
20786528 |
tcagatggattctgaaacatcctacaaagccctaccattacctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagag |
20786429 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20786428 |
gcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
20786331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 882 - 1171
Target Start/End: Original strand, 29469433 - 29469730
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttgtgagtgaa---------acccaccataaaggcttaaacactat-tttcaattcatcaa |
971 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
29469433 |
ccaacagattggtatctagagctttcttcttagagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactacctttcatttcatcaa |
29469532 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
29469533 |
tcagatggattctgaaacatcctacaaagccctaccattacctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagag |
29469632 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469633 |
gcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
29469730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 882 - 1171
Target Start/End: Original strand, 19965187 - 19965484
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttgtgagtgaa---------acccaccataaaggcttaaacactat-tttcaattcatcaa |
971 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
19965187 |
ccaacagattggtatctagagccatcttcttagagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactacctttcatttcatcaa |
19965286 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
19965287 |
tcagatggattctgaaacatcctacaaagctctaccattacctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagag |
19965386 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965387 |
gcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
19965484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 882 - 1171
Target Start/End: Complemental strand, 21027809 - 21027512
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttgtgagtgaa---------acccaccataaaggcttaaacactat-tttcaattcatcaa |
971 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
21027809 |
ccaacagattggtatctagagccatcttcttagagggacttgtgagtgaagtgagtgaaacccaccataaaagcttaaacactacctttcatttcatcaa |
21027710 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
21027709 |
tcagatggattctgaaacatcctacaaagctctacctttacctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagag |
21027610 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgttttagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
1171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21027609 |
gcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttg--tcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaa |
21027512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 882 - 1122
Target Start/End: Complemental strand, 6368184 - 6367935
Alignment:
| Q |
882 |
ccaacaaattggtatctagagccttcttcttggagggacttg---------tgagtgaaacccaccataaaggcttaaacactattt-tcaattcatcaa |
971 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||| ||||||||| | ||| |||| ||||||||| |||| |||||||||||| |
|
|
| T |
6368184 |
ccaacagattggtatcaa-agccttcttcttggagggacttgcgagtgaagtgagtgaaagctaccgtaaaagcttaaacattattcctcaattcatcaa |
6368086 |
T |
|
| Q |
972 |
acagatggattctgaaacatcctacaaagccctaccattacctatgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagag |
1071 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
6368085 |
actgatggattctgaaacaccctacaaagccctaccattatctgtgtttgatggtgaaaactatcatatatgggcagcaggaatggaggcgtatttagag |
6367986 |
T |
|
| Q |
1072 |
gcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttg |
1122 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6367985 |
gcaaatgacctctgcgaagctcttgaggaggactacgaagttcttcctttg |
6367935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 619 - 887
Target Start/End: Complemental strand, 6677970 - 6677705
Alignment:
| Q |
619 |
tgttgactggatgactatgaaactacttgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
718 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6677970 |
tgttgactggatgagtatggaactact-gttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctat |
6677872 |
T |
|
| Q |
719 |
ttattaccaattttgtaggcatttagttttcaaatagtagtttctttatgcattattttaggcttttctctatgtataaatatgatgggttatcattcaa |
818 |
Q |
| |
|
|| |||||| |||| ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6677871 |
ttgttaccagttttttagacacttagtgttcaaatagtaatttctttatgcattattttaggcttttctttatgtataaatatgat-ggttatcattcaa |
6677773 |
T |
|
| Q |
819 |
tagaaatatcccttttatgttgttcacataacatattcttttccacgttaaacctttctatatccaaca |
887 |
Q |
| |
|
|| ||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6677772 |
taaaaacatcccttttatgctgttcacataacatatt-ttttccactttaaacctttctatatccaaca |
6677705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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