View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15336_low_3 (Length: 495)
Name: NF15336_low_3
Description: NF15336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15336_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 35791563 - 35791195
Alignment:
| Q |
11 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
110 |
Q |
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| T |
35791563 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
35791464 |
T |
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| Q |
111 |
tacatggagaaacacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
210 |
Q |
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| T |
35791463 |
tacatggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
35791364 |
T |
|
| Q |
211 |
atagcaatagctaatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaagagt-ttttgctcacggcctaccaaaacgttatgttat |
309 |
Q |
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| T |
35791363 |
atagcaatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaagagttttttgctcacggcctaccaaagcgttatgttat |
35791264 |
T |
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| Q |
310 |
tttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaata |
384 |
Q |
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| T |
35791263 |
tttactcttgagatcctatgcattgtcaatgcaatatactactaata------tcttattaatgtaggttcaata |
35791195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
| Q |
123 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
222 |
Q |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
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| Q |
223 |
aatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaag |
273 |
Q |
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| T |
35782094 |
aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag |
35782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 495
Target Start/End: Complemental strand, 35781013 - 35780827
Alignment:
| Q |
305 |
gttattttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaatatgtcatttcacataaa---- |
400 |
Q |
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| T |
35781013 |
gttattttactcttcatatcctatccattgtgaatgcaatatactagtaata------tcttattaatgtaggttcaatatgtcatttcacataaacttg |
35780920 |
T |
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| Q |
401 |
-----attggcaaaaataaggaaaagatatcaataatgcttaagaagacaatgtgaatctataatatactataccaaaattgagtaatggaatgtaaaaa |
495 |
Q |
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| T |
35780919 |
caaaaattggcaaaaataagaaaaagatatcaataatgtttaagaagacaatgtg-------aatatactataccaaaattgagtaatggaatgtcaaaa |
35780827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 35782280 - 35782183
Alignment:
| Q |
11 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt |
108 |
Q |
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|||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35782280 |
gaagaataccaaaggcttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
| Q |
123 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
222 |
Q |
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||||||||||||||||||||| |||||||| |||| ||||||| ||||||||| ||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
35785071 |
cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct |
35784978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 3334970 - 3335090
Alignment:
| Q |
12 |
aagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttct |
111 |
Q |
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|||||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| || |||||| ||||||| |
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| T |
3334970 |
aagaatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttct |
3335069 |
T |
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| Q |
112 |
acatggagaaacacctccttc |
132 |
Q |
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| T |
3335070 |
tcttggagaatcaccaccttc |
3335090 |
T |
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