View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15337_high_1 (Length: 497)
Name: NF15337_high_1
Description: NF15337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15337_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 39384057 - 39383590
Alignment:
| Q |
1 |
aatcaaatcaaaagagcgttttcaagacttttattcttcataatgaacttttgttctcactttgtagatagaagttacataactttttcctatatactag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39384057 |
aatcaaatcaaaagagcgttttcaagacttttattcttcataatgaacatttgttctcactttgtagatagaagttacataactttttcctatatactag |
39383958 |
T |
|
| Q |
101 |
aatctggatgatacaaaatggaaaacaatcatcaaatcaaacacatttagaactagaaaaggnnnnnnntcatcatggggctaagagtttcgaatcatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39383957 |
aatctggatgatacaaaatggaaaacaatcatcaaatcaaagacatttagaactagaaaaggaaaaaaatcatcatggggctaagagtttcgaatcatct |
39383858 |
T |
|
| Q |
201 |
aatacccattagagattgatttgggtgttgaggtgaaaacaaaaggtcccacggtatacaaattcatcttattgtcatggaggaagtgataggaatgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39383857 |
aatacccattagagattgatttgggtgttgaggtgaaaacaaaaggtcccacggtatacaaattcatcttattgtcatggaggaagtgataggaatgaag |
39383758 |
T |
|
| Q |
301 |
ttcagcaccactaattcctttgttaaaatcagtgggatagttgcagttgttcaaaggagaagcttcaaggaataccctacattccttcagcacccgtttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39383757 |
ttcagcaccactaattcctttgttaaaatcagtgggatagttgcagttgttcaaaggagaagcttcaaggaataccctacactccttcagcacccgtttt |
39383658 |
T |
|
| Q |
401 |
tctgcaaccagttcttgttgaaacaatgttgcaaggaaatagccctttgcattggttgcatcatttaa |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39383657 |
tctgcaaccagttcttgttgaaacaatgttgcaaggaaatagccctttgcattggttgcatcatttaa |
39383590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 39384160 - 39384051
Alignment:
| Q |
29 |
ttttattcttcataatgaacttttgt---tctcactttgtagatagaagttacataactttttcctatatactagaatctggatgatacaaaatggaaaa |
125 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||| |||||||||||||| |||||||||||||||| | | |||||| |||||||||||| |
|
|
| T |
39384160 |
ttttattcttcataatgatattttttctctctcacttataagatagaagttacagaactttttcctatatatt------tagatgatgcaaaatggaaaa |
39384067 |
T |
|
| Q |
126 |
caatcatcaaatcaaa |
141 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39384066 |
caatcatcaaatcaaa |
39384051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University