View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_high_1 (Length: 512)
Name: NF15338_high_1
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 21 - 505
Target Start/End: Original strand, 42392192 - 42392676
Alignment:
| Q |
21 |
gaccgctggtgataccttcttgattatgtttgttgtatgttctgcttgcagggtaatttgatactttctgatatcgggcttgctgaaaaacgaatctatc |
120 |
Q |
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| T |
42392192 |
gaccactggtgataccttcttgattatgtctgttgtatgttctgcttgcagggtaatttgatactttctgatatcgggcttgctgaaaaacgaatctatc |
42392291 |
T |
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| Q |
121 |
atgctgctctcaatggtaataatagcctgcctagtgttttgcgtccgaaagacgattgataatttcatgatcccggcttcaattgatatgtagttacact |
220 |
Q |
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| T |
42392292 |
atgctgctctcaatggtaataatagcctgcctagtgttttgcgtccgaaagacgattgataatttcatgatcccggcttcaattgatatgtagttacact |
42392391 |
T |
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| Q |
221 |
cgagttttggtttcaaacttagaattttctttaaatatatgaatggactgctcacgtgaggggtgttatagctaatgcattctcctcaaattcagaatgt |
320 |
Q |
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| T |
42392392 |
cgagttttggtttcaaacttagaattttctttaaatatatgaatggacagctcacgtgaggggtgttatagctaatacattttcctcaacttcagaatga |
42392491 |
T |
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| Q |
321 |
tgtataatttccatgtaaataatgtaaccaataatgtgttttaattgctggtgaatgagatacacaattcaagagtcaagttttattcacgttttgattg |
420 |
Q |
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| T |
42392492 |
tgtataatttccatgtaaataatgtaaccaataatgtgttttaattgctggtgaatgagatacacaattcaagagtcaagttttattcacgttttgattg |
42392591 |
T |
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| Q |
421 |
tgataaatgaccttgctcattttagaaaagccatgtatctgaatcttctgtttcatgtccctgcaggtttgttttccctatgcta |
505 |
Q |
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| T |
42392592 |
tgataaatgaccttgctcattttagaaaagccatgtatctgaatcttctgtttcatgtccctgcaggtttgttttcccaatgcta |
42392676 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 6749734 - 6749820
Alignment:
| Q |
53 |
ttgtatgttctgcttgcagggtaatttgatactttctgatatcgggcttgctgaaaaacgaatctatcatgctgctctcaatggtaa |
139 |
Q |
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||||||||| || |||||||||||| || ||||||| ||||| ||||| ||||| |||||||| |||||| ||||||| |||||||| |
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| T |
6749734 |
ttgtatgttttgtttgcagggtaatatgttactttcagatattgggctagctgagaaacgaatatatcattctgctcttaatggtaa |
6749820 |
T |
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