View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_low_11 (Length: 261)
Name: NF15338_low_11
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3731328 - 3731577
Alignment:
| Q |
1 |
tttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataac |
100 |
Q |
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| T |
3731328 |
tttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataac |
3731427 |
T |
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| Q |
101 |
cattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaa |
200 |
Q |
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| T |
3731428 |
cattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaa |
3731525 |
T |
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| Q |
201 |
agtacctcaggataataactgctatcaatcttctgaatttccatgatgatgt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3731526 |
agtacctcaggataataactgctatcaatcttctgaatttccatgaagatgt |
3731577 |
T |
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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 11683800 - 11683885
Alignment:
| Q |
161 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatga |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatga |
11683885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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