View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_low_2 (Length: 658)
Name: NF15338_low_2
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 45666496 - 45667047
Alignment:
| Q |
19 |
actacctacaaacaatacagcacctttctcctcctttcctctctaacattaaatatttttt-gtttcttgcagtgtgcttggatggaacattacctggtt |
117 |
Q |
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| T |
45666496 |
actacctacaaacaatacagcacctttctcctcctttcctctc-aacattaaatatttttttgtttcttgcagtgtgcttggatggaacattacctggtt |
45666594 |
T |
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| Q |
118 |
accatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666595 |
accatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttc |
45666694 |
T |
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| Q |
218 |
ttttcttttcgt---acttcaatagcannnnnnngtgaatttgttggctgattcccattttttgcaacatacatatatgccatggcatatataattaact |
314 |
Q |
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|||||||||||| |||| ||||||| |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
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| T |
45666695 |
ttttcttttcgtcgtactttaatagcatttttttgtgaattttttggctgattcccattttt-gtaacatgcatatatgccatggcatatataattaact |
45666793 |
T |
|
| Q |
315 |
gaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaagctacttacccttttttgctgtaaaaaagttatagtgata |
414 |
Q |
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| T |
45666794 |
gaaaatatttagaaataattaaagttttaggatttctaactgtcatcatgtgttggtcaagctactttcccttttttgctgtaaaaaagttatagtgata |
45666893 |
T |
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| Q |
415 |
ctaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgtttatcgcaagaaaacacggcatggatcatcattatacatgga |
514 |
Q |
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| T |
45666894 |
ctaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgtttatcgcaagaaaacacggcgtggatcatcattatacatgga |
45666993 |
T |
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| Q |
515 |
aaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
568 |
Q |
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| T |
45666994 |
aaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
45667047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 37973790 - 37973690
Alignment:
| Q |
77 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggta |
176 |
Q |
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||||||| | ||||| ||||||||||||||||| |||| ||| ||||| | | ||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
37973790 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggta |
37973691 |
T |
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| Q |
177 |
t |
177 |
Q |
| |
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| T |
37973690 |
t |
37973690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 568
Target Start/End: Original strand, 38257767 - 38257829
Alignment:
| Q |
506 |
atacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
568 |
Q |
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|||||||||||| | |||||||||||||||||| | || ||||||||||||||||| ||||| |
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| T |
38257767 |
atacatggaaaatcaaataccattcacaggaatattgagcaataaacctgaagaaaacccagg |
38257829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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