View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_low_3 (Length: 593)
Name: NF15338_low_3
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 19 - 587
Target Start/End: Original strand, 35981527 - 35982096
Alignment:
| Q |
19 |
aaacccgggtcaccacattttgtctccccgtgtatgtttatttgaggacagttataatgtaaaatgtccataagcgtcaaactatgttatgtattactac |
118 |
Q |
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| T |
35981527 |
aaacccgggtcaccacattttgtctccccgtgtatgtttatttgaggacagttataatgtaaaatgtccataagcgtcaaactatgttatgtattactac |
35981626 |
T |
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| Q |
119 |
gaaatttgacactaatcactataaggaacatgattagtattccgctggttgaggcattactaacttttttgtagttgaaagaccaaggttctacagagaa |
218 |
Q |
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| T |
35981627 |
gaaatttgacactaatcactataacgaacatgattagtattccgcgggttgaggcattactaacttttttgtagttgaaagaccaaggttctacagagaa |
35981726 |
T |
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| Q |
219 |
tttgtttttattctctctcccttttttaataagtatggtcctggaaagaaagagttagttgaggaataaagcttttcaaccgagttgctactaaatgatt |
318 |
Q |
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| T |
35981727 |
tttgtttttattctctctcccttttttaataagtatggtcctggaaagaaagagttagttgaggaataaagcttttcaaccgagttgctactaaatgatt |
35981826 |
T |
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| Q |
319 |
atagataaatgttgctatctgttaatttaatgttcatagtcatacctatagtgaattagttagtaatccattcatttcatttatctgcggtgacagagaa |
418 |
Q |
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| T |
35981827 |
atagataaatgttgctatctgttaatttaatgttcatagtcatacctatagtgaattagttagtaatccattcatttcatttatctgcggtgacacagaa |
35981926 |
T |
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| Q |
419 |
gtttctt-nnnnnnnttattataacagctagaaaaatttcatttgattgttacaataatgctgcgaatttaaaccagcttgtaagtcgaggattgacgaa |
517 |
Q |
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| T |
35981927 |
gtttcttaaaaaaaattattataacagctagaaaattttcatttgattgttacaataatgctgcgaatttaaaccagcttgtaagtcgaggattgacgaa |
35982026 |
T |
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| Q |
518 |
agtttataagctatatttagaaaatatctccaagactctaaccaatattatgcaaaaactgcacacagta |
587 |
Q |
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| T |
35982027 |
agtttataagctatatttagaaaatatctccaagactctaaccaatattatgcaaaaactgcacacagta |
35982096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 35992305 - 35992363
Alignment:
| Q |
319 |
atagataaatgttgctatctgttaatttaatgttcatagtcatacctatagtgaattag |
377 |
Q |
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| T |
35992305 |
atagagaaatgttgctaattgttaatttaatgttcatagccatacctatagtaaattag |
35992363 |
T |
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