View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_low_8 (Length: 286)
Name: NF15338_low_8
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 1537727 - 1538003
Alignment:
| Q |
1 |
gcatttgaatttctttggattagcggctcc---tcctcct---ccacctcaggtttctgatcaaagcagtagcaaaaccacttattgtggttacagtagt |
94 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||| | |
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| T |
1537727 |
gcatttgaatttctttggattagcggctcctcctcctcctccaccacctcaagtttctgaccaatgcagtagcaaaaccagttattgtggttacagtact |
1537826 |
T |
|
| Q |
95 |
ggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcacaaggaacttaag |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1537827 |
ggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcataaggaacttaag |
1537926 |
T |
|
| Q |
195 |
ctgatcgcaaaaatccttccttttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttg |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1537927 |
ctgatcgcaaaaatccttccttttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttg |
1538003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 10164737 - 10164583
Alignment:
| Q |
117 |
accacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcacaaggaacttaagctgatcgcaaaaatccttcctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||| ||||||||||| ||||||||||||||| |
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| T |
10164737 |
accacaacagtaacagatgacagctattatcccccaaaacagacatcttatcccagtaacattcaaaaggaatttaagctgatcccaaaaatccttcctt |
10164638 |
T |
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| Q |
217 |
ttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttg |
271 |
Q |
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| T |
10164637 |
ttgaagatgatgattaagacaatgaaagaaacccataatattatggcatattttg |
10164583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 10164766 - 10164724
Alignment:
| Q |
76 |
ttattgtggttacagtagtggtaacaaccaccacaacagtaac |
118 |
Q |
| |
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||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
10164766 |
ttattgtggctacaatattggtaacaaccaccacaacagtaac |
10164724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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