View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15338_low_9 (Length: 285)
Name: NF15338_low_9
Description: NF15338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15338_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 26986763 - 26986522
Alignment:
| Q |
18 |
agttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaatgacataattaggtaatatacatcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26986763 |
agttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagaagaaatgacataattaggtaatat------- |
26986671 |
T |
|
| Q |
118 |
ttcagtgttcctttatcctgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggtttcggaaacaagaatcactctat |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26986670 |
-tcagtgttcctttatctcgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggttttggaaacaagaatcactctat |
26986572 |
T |
|
| Q |
218 |
caaagttgagaccactaaaataataaacattgttcctactgaatagagtc |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26986571 |
caaagttgagaccactacaataataaacattgttcctactgaatagagtc |
26986522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 27078546 - 27078789
Alignment:
| Q |
18 |
agttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaatgacataattaggtaatatacatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27078546 |
agttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagaagaaatgacataattaggtaatat------- |
27078638 |
T |
|
| Q |
118 |
ttcagtgttcctttatcctgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggtttcggaaacaagaatcactctat |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27078639 |
-tcagtgttcctttatctcgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggttttggaaacaagaatcactctat |
27078737 |
T |
|
| Q |
218 |
caaa--gttgagaccactaaaataataaacattgttcctactgaatagagtc |
267 |
Q |
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|||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
27078738 |
caaattgttgagaccactacaataataaacattgttcccactgaatagagtc |
27078789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 27026460 - 27026395
Alignment:
| Q |
188 |
atgaggtttcggaaacaagaatcactctatcaaagttgagaccactaaaataataaacattgttcc |
253 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
27026460 |
atgaggttttggaaacaagaatcactctatcaaagttgagaccactacaataacaaacattgttcc |
27026395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 27026567 - 27026511
Alignment:
| Q |
43 |
ataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaatgacataa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||| |||||| ||||| |
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|
| T |
27026567 |
ataagcaaaccatagctaaaaacatgttgtcgtttgacttgagaagaaatggcataa |
27026511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 34688879 - 34688634
Alignment:
| Q |
18 |
agttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaatgacataattaggtaatatacatcat |
117 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34688879 |
agttttcgcacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagaagaaatgacataattaggtaatat------- |
34688787 |
T |
|
| Q |
118 |
ttcagtgttcctttatcctgt-----aataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggtttcggaaacaagaatcac |
212 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
34688786 |
-tcagtgttcctttatcttgtcttgtaataaaggcaatgccttaa-tgtaattgaaacttgcatgacaatctttcatgaggttttggaaacaagtatcac |
34688689 |
T |
|
| Q |
213 |
tctatcaaagttgagaccactaaaataataaacattgttcctactgaatagagtc |
267 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34688688 |
tctatcaaagttgagaccactacaataataaacattgttcctactgaatagagtc |
34688634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 30231358 - 30231206
Alignment:
| Q |
115 |
catttcagtgttcctttatcctgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggtttcggaaacaagaatcactc |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30231358 |
catttcagtgttcctttatcttgtaataaaggcaatgccttaaatgtaattaaaacttgcatgacaatctttcatgaggttttggaaacaagaatcactc |
30231259 |
T |
|
| Q |
215 |
tatcaaagttgagaccactaaaataataaacattgttcctactgaatagagtc |
267 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
30231258 |
tatcaaagttgagaccactacaataataaacattgtttctactgaatagagtc |
30231206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 30229116 - 30228970
Alignment:
| Q |
111 |
acatcatttcagtgttcctttatcctgtaataaaggcaatgccttaaatgtaattgaaacttgcatgacaatctttcatgaggtttcggaaacaagaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
30229116 |
acatcatttcagtgttcctttatcttgtaataaaggcaatgccttaaa----------acttccatgacaatctttcatgaggttttggaaacaagaatc |
30229027 |
T |
|
| Q |
211 |
actctatcaaagttgagaccactaaaataataaacattgttcctactgaatagagtc |
267 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
30229026 |
actctatcaaagttgagaccactacaataataaacattgttcctgctgaatagagtc |
30228970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 30231843 - 30231768
Alignment:
| Q |
17 |
tagttttcacacagcagtgaagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaat |
92 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
30231843 |
tagttttcatacagcagggaagatacataagcaaaccatagctaaaaacatgttgtcatttgacttaagaagaaat |
30231768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 30231509 - 30231435
Alignment:
| Q |
36 |
aagatacataagcaaaccatagctaaaaacatgttatcatttgacttaagatgaaatgacataattaggtaatat |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||| |||||||| |||||||||||| |||||||||| |
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| T |
30231509 |
aagatacataagaaaaccatagctaaaaacatgttgtcgtttaacttaagaagaaatgacataagtaggtaatat |
30231435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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