View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15339_low_1 (Length: 496)
Name: NF15339_low_1
Description: NF15339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15339_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 18057164 - 18056699
Alignment:
| Q |
13 |
cagacatgacaaattacatgtttttcttaaacggactcataaactcgagcaacgatgtttctgttcttcattataaagggattattcatcattctttagg |
112 |
Q |
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| T |
18057164 |
cagacatgacaaattacatgtttttcttaaacggactcataaactcgaccaacgatgtttctgttcttcattataaagggattattcatcattctttagg |
18057065 |
T |
|
| Q |
113 |
gagtgatgaacatgtggaagaactaatcaacaacataactaaagatatagttcctgatatgaatgagtcatatttatacaaagttgtgaatgatgcaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18057064 |
gagtgatgaacatgtggaagaactaatcaacaacataactaaagatatagttcctgatatgaatgagtcatatttatacaaagttgtgaatgatgcaaat |
18056965 |
T |
|
| Q |
213 |
gattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttttgg |
312 |
Q |
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| T |
18056964 |
gattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttttgg |
18056865 |
T |
|
| Q |
313 |
ctctttactttacattcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggtttgttcat |
412 |
Q |
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| T |
18056864 |
ctctttactttacattcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggtttgttcat |
18056765 |
T |
|
| Q |
413 |
tcttccatttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctc |
478 |
Q |
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| T |
18056764 |
tcttccatttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctc |
18056699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 15733777 - 15733445
Alignment:
| Q |
13 |
cagacatgacaaattacatgtttttcttaaacggactcataaactcgagc-aacgatgtttctgttcttcattataaagggattattcatcattctttag |
111 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||||| || ||| || |||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
15733777 |
cagacatgacaacttacatgtttttcttaaacagactcataaattc-agctaatgatgtttctgctcttcattataaaggggttattcatcattctttag |
15733679 |
T |
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| Q |
112 |
ggagtgatgaacatgtggaagaactaatcaacaacataactaaagatatagttcctgatatgaatgagtcatatttatacaaagttgtgaatgatgcaaa |
211 |
Q |
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| |||||||||||||| | ||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || || |
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| T |
15733678 |
gaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaacgtggtgaatgaggcgaa |
15733579 |
T |
|
| Q |
212 |
tgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttttg |
311 |
Q |
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||| |||||| ||| ||||||||| |||| |||| | | |||| || ||||||||||| || ||||||||||||||||| || || || ||| ||||| |
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| T |
15733578 |
tgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgctcttttg |
15733479 |
T |
|
| Q |
312 |
gctctttactttacattcatacaagcaatttgtg |
345 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||| |
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| T |
15733478 |
gcactttattttacattcatacaagcaatttgtg |
15733445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 15727757 - 15727434
Alignment:
| Q |
14 |
agacatgacaaattacatgtttttcttaaacggactcataaactcgagc-aacgatgtttctgttcttcattataaagggattattcatcattctttagg |
112 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||||| ||| || |||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
15727757 |
agacatgacaacttacatgtttttcttaaacagactcataaactc-agctaatgatgtttctgctcttcattataaaggggttattcatcattctttagg |
15727659 |
T |
|
| Q |
113 |
gagtgatgaacatgtggaagaactaatcaacaacataactaaagatatagttcctgatatgaatgagtcatatttatacaaagttgtgaatgatgcaaat |
212 |
Q |
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|||||||||||||| | ||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||| |
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| T |
15727658 |
aagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaaagtggtgaatgaggcgaat |
15727559 |
T |
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| Q |
213 |
gattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttttgg |
312 |
Q |
| |
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|| |||||| ||| ||||||||| |||| |||| | | |||| || ||||||||||| || ||||||||||||||||| || | || ||| |||||| |
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| T |
15727558 |
gagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacaataggtgctcttttgg |
15727459 |
T |
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| Q |
313 |
ctctttactttacattcatacaagc |
337 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
15727458 |
ctctttattttacattcatacaagc |
15727434 |
T |
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Back To:
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