View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15339_low_2 (Length: 446)
Name: NF15339_low_2
Description: NF15339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15339_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 38230808 - 38231141
Alignment:
| Q |
21 |
gggatatgcaacgctgtggaggaaaaacttcatgtggtggggaatgaagacaactaatagatcacttggatgagaaagtaaaaagtctctttcaatttaa |
120 |
Q |
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| T |
38230808 |
gggatatgcaacgctgtggaggaaaaacttcatgtggtggggaatgaagacaactaatagatcatttggatgagaaagtaaaaaatctctttcaatttaa |
38230907 |
T |
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| Q |
121 |
ccataggtcttggaattgagtcatgagaatgcaacaatgttaaatctcttgagaaagaattttgccatcaattataatcttatccttctagagagattaa |
220 |
Q |
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| T |
38230908 |
ccataggtcttggaattgagtcatgagaatataacaatgttaaatctcttgagaaagaattttgccatcaattatagtcttatccatctagagagattaa |
38231007 |
T |
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| Q |
221 |
tctatgcaattgtgcaaataatacacggttgaaaaaacattcaatgctaaaagtgttcattaattttttctttgaagcaagaaatgttcattaattcatt |
320 |
Q |
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| T |
38231008 |
tctatgcaattgtgcaaataatacacggttgaaaaaacattcaatgctaaaaatgttcattaattttttctttgaagcaagaaatgttcattaattcatt |
38231107 |
T |
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| Q |
321 |
taaccaaagaaaaagaatgatcattcattacatt |
354 |
Q |
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| T |
38231108 |
taaccaaagaaaaagaatgatcactcattacatt |
38231141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 38231555 - 38231653
Alignment:
| Q |
338 |
tgatcattcattacattacatttatatataattatttaccatgttctaatgttcattcattcgatttttaggtactgagaaattttttatttacctatg |
436 |
Q |
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| T |
38231555 |
tgatcattcattacattacatttatatataattatttaccatgttctaatgttcattcattcgatttttaggtactgagaaattttttatttacctatg |
38231653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 43346411 - 43346361
Alignment:
| Q |
134 |
aattgagtcatgagaatgcaacaatgttaaatctcttgagaaagaattttg |
184 |
Q |
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| T |
43346411 |
aatttagtcatgagaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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