View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15339_low_3 (Length: 269)
Name: NF15339_low_3
Description: NF15339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15339_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 48430881 - 48430630
Alignment:
| Q |
1 |
tttctttatgcatatttttattctttgatatcgattttttaaaccagcaggtggctgggactgggagtaaagcattgctgactatcctggctagagttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48430881 |
tttctttatgcatatttttattctttgatatcgattttttaaaccagcaggtggctggga------gtaaagcattgctgactatcctggctagagttaa |
48430788 |
T |
|
| Q |
101 |
ggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttgtaacctgggttgtaggcgtttccaaattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
48430787 |
ggaggagaaacctcatgttcgattcacaaaggaattcgttctagttctctttctatatcatagtctttgtaacctgggttgtacgcgtttccaaat---t |
48430691 |
T |
|
| Q |
201 |
gaagaagagtaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgc |
261 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48430690 |
gaagaagagcaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgc |
48430630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 23627495 - 23627589
Alignment:
| Q |
75 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttg |
169 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||| ||| |||| ||||||| |||| || |||||||||||||| | |||||||||||||| |
|
|
| T |
23627495 |
ttgcttactatcctgactagagttatggaggagactccttcagttccattcacacaggagttcattctagttctctttatgtatcatagtctttg |
23627589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 34114494 - 34114528
Alignment:
| Q |
211 |
aggcaagtttttctggaaatcttaacaaagtttat |
245 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
34114494 |
aggcaagtttttctggaaatgttaacaaagtttat |
34114528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 34148677 - 34148710
Alignment:
| Q |
211 |
aggcaagtttttctggaaatcttaacaaagttta |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
34148677 |
aggcaagtttttctggaaatgttaacaaagttta |
34148710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 34161293 - 34161326
Alignment:
| Q |
211 |
aggcaagtttttctggaaatcttaacaaagttta |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
34161293 |
aggcaagtttttctggaaatgttaacaaagttta |
34161326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 52805821 - 52805727
Alignment:
| Q |
75 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttg |
169 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||| ||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
52805821 |
ttgcttactatcctaactagagttatggaggagactccttccgttcgatttgcacaagaattccttctagttctctttctgtatcatagtctttg |
52805727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University