View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1533_low_1 (Length: 577)
Name: NF1533_low_1
Description: NF1533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1533_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 23 - 566
Target Start/End: Original strand, 43222096 - 43222639
Alignment:
| Q |
23 |
caccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaacnnnnnnnnnnnnnnnnnnnntttatcatcaaatgtcatactcatacttagatat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43222096 |
caccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaacaaaaacctaaaaagcaaaaatttatcatcaaatgtcatactcatacttagatat |
43222195 |
T |
|
| Q |
123 |
gtgcagaaacaattattcagtgcgtggaagccatcacagacaattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222196 |
gtgcagaaacaattattcagtgcgtggaagccatcacagacaattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgat |
43222295 |
T |
|
| Q |
223 |
tgatgatcaacagctgcaagtgtgcctacaggtttgccattgaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222296 |
tgatgatcaacagctgcaagtgtgcctacaggtttgccattgaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggct |
43222395 |
T |
|
| Q |
323 |
cgaacgagttctgagcagatgaaagtgatcttgctccaatggacagttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagccttgg |
422 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222396 |
cgaacgagttctgagcagatgaaaatgatcttgctccaatggacagttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagccttgg |
43222495 |
T |
|
| Q |
423 |
attgtcaagcaagccagagagatcaaaagcatccatctcggagagcaaacactgagacctgattttcctaattcccacaggcccgttcattccagagatc |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222496 |
attgtcaagcaagccagagagatcaaaagcatccatctcggagagcaaacactgagacctgattttcctaattcccacaggcccgttcattccagagatc |
43222595 |
T |
|
| Q |
523 |
gaacactgagacttgattttcctcattcccacaagcccgttcat |
566 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222596 |
gaacactgagacttgattttcctcattcccacaagcccgttcat |
43222639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 164 - 345
Target Start/End: Original strand, 43232654 - 43232831
Alignment:
| Q |
164 |
aattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtttgccatt |
263 |
Q |
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||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |||||||||||||||||||| |||||| |||||| || | |
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| T |
43232654 |
aattttagtactgattaagaaattc----acctgatcgtaatttagaacttcctctgcttgatgatcaacagctgcaattgtgccaacaggtgcacctct |
43232749 |
T |
|
| Q |
264 |
gaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaa |
345 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||| ||||||||||| |
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| T |
43232750 |
gaaatggactagagatttcctgagagattcccaggcatcagcaaccattggatgcggctcaaacgagttgcgagcagatgaa |
43232831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 43232931 - 43233045
Alignment:
| Q |
385 |
tcatcaactgatctctgtctctctatgtttagccttggattgtcaagcaagccagagagatcaaaagcatccatctcggagagcaaacactgagacctga |
484 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| || |||||||||| | || |||||| ||| |||||||||| | | | |||||||||| | || |
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| T |
43232931 |
tcatcaaatgatctctgtctctctatgtttagcctcggcctgtcaagcaaacgagtgagatcgaaatcatccatctcagccatcgaacactgagagccga |
43233030 |
T |
|
| Q |
485 |
ttttcctaattccca |
499 |
Q |
| |
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|||||||||||||| |
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| T |
43233031 |
ctttcctaattccca |
43233045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 43231514 - 43231559
Alignment:
| Q |
23 |
caccattcatcaaaaaggctagtgcacttggaacaaaatcgcgaac |
68 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
43231514 |
caccattcatcaaaaaggctagagcacttgggacaaaatctcgaac |
43231559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 43222597 - 43222640
Alignment:
| Q |
470 |
aacactgagacctgattttcctaattcccacaggcccgttcatt |
513 |
Q |
| |
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||||||||||| |||||||||| ||||||||| ||||||||||| |
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| T |
43222597 |
aacactgagacttgattttcctcattcccacaagcccgttcatt |
43222640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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