View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15340_high_1 (Length: 546)

Name: NF15340_high_1
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15340_high_1
NF15340_high_1
[»] chr1 (6 HSPs)
chr1 (20-534)||(7554363-7554877)
chr1 (214-484)||(29658800-29659070)
chr1 (210-275)||(19468333-19468398)
chr1 (211-353)||(9581193-9581335)
chr1 (340-481)||(29718953-29719094)
chr1 (210-353)||(9586761-9586904)
[»] chr5 (6 HSPs)
chr5 (343-484)||(41901568-41901709)
chr5 (364-503)||(32267381-32267520)
chr5 (343-473)||(41889587-41889717)
chr5 (217-353)||(41901376-41901512)
chr5 (238-353)||(32267597-32267712)
chr5 (440-481)||(17205527-17205568)
[»] chr8 (6 HSPs)
chr8 (343-482)||(27922435-27922574)
chr8 (343-482)||(18315306-18315445)
chr8 (365-423)||(32151287-32151345)
chr8 (243-350)||(34936027-34936134)
chr8 (364-482)||(17636455-17636572)
chr8 (377-482)||(28246360-28246465)
[»] chr3 (5 HSPs)
chr3 (364-503)||(51113835-51113974)
chr3 (343-482)||(13470765-13470904)
chr3 (343-482)||(51120926-51121065)
chr3 (364-482)||(51764494-51764612)
chr3 (253-347)||(1657378-1657472)
[»] chr2 (2 HSPs)
chr2 (364-504)||(45245139-45245279)
chr2 (356-482)||(1037710-1037836)
[»] chr6 (21 HSPs)
chr6 (343-505)||(9411259-9411421)
chr6 (343-475)||(6585270-6585402)
chr6 (146-348)||(9411482-9411681)
chr6 (364-504)||(6402765-6402905)
chr6 (356-503)||(7994228-7994375)
chr6 (343-504)||(14820598-14820759)
chr6 (379-482)||(6415893-6415996)
chr6 (347-481)||(19632367-19632501)
chr6 (356-481)||(6603248-6603373)
chr6 (357-482)||(11936322-11936447)
chr6 (357-482)||(11948302-11948427)
chr6 (343-482)||(14818309-14818448)
chr6 (343-482)||(6432088-6432227)
chr6 (364-482)||(7119084-7119202)
chr6 (439-504)||(6394769-6394834)
chr6 (235-351)||(7119284-7119397)
chr6 (364-482)||(7131562-7131680)
chr6 (235-351)||(7131762-7131875)
chr6 (178-296)||(19632615-19632733)
chr6 (75-111)||(9411716-9411752)
chr6 (233-351)||(10579593-10579708)
[»] chr4 (18 HSPs)
chr4 (368-482)||(546840-546954)
chr4 (356-482)||(55908774-55908900)
chr4 (357-423)||(1524533-1524599)
chr4 (343-504)||(1548457-1548618)
chr4 (343-527)||(1513440-1513621)
chr4 (343-522)||(8184063-8184242)
chr4 (343-481)||(640843-640981)
chr4 (343-484)||(7307785-7307926)
chr4 (233-351)||(1600546-1600664)
chr4 (365-482)||(558425-558542)
chr4 (218-307)||(8186930-8187019)
chr4 (433-482)||(53761892-53761941)
chr4 (404-476)||(1489455-1489527)
chr4 (343-422)||(553466-553545)
chr4 (343-426)||(570334-570417)
chr4 (343-482)||(12121490-12121629)
chr4 (440-482)||(553406-553448)
chr4 (440-504)||(1524613-1524677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (356-482)||(670-796)
[»] chr7 (2 HSPs)
chr7 (368-505)||(15092209-15092346)
chr7 (368-481)||(10614521-10614634)
[»] scaffold0014 (1 HSPs)
scaffold0014 (295-351)||(88943-88999)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Complemental strand, 7554877 - 7554363
Alignment:
Q  20 tatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcattaagaactatccttcacttagtgagattaaactggaatacacatattt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554877 tatcctttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcgttaagaactatccttcacttagtgagattaaactggaatacacatattt 7554778  T
Q  120 cacaaaaaataatatggagaagtcttattctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagat 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554777 cacaaaaaataatatggagaattcttattctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagat 7554678  T
Q  220 gaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaa 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554677 gaaaacatcaaagtcttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaa 7554578  T
Q  320 gaagatgtcataacattagacatttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaact 419  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554577 gaagatgtcataacattagacatttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaact 7554478  T
Q  420 gttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaa 519  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554477 gttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaa 7554378  T
Q  520 gtgaatggcaatatt 534  Q
    |||||||||||||||    
T  7554377 gtgaatggcaatatt 7554363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 484
Target Start/End: Original strand, 29658800 - 29659070
Alignment:
Q  214 agagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcaca 313  Q
    |||||| ||||||||| | |||| |||||||| || ||||| || ||  ||||||||||||   ||||  | ||| ||||| |||||  ||||| |||      
T  29658800 agagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattggaaggacgtatctgaagaaactatttctcaag 29658899  T
Q  314 ttttaagaagatgtcataacattagacatttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggactttt 413  Q
    |||||| | | |||  ||| ||||  ||||||||||| || ||||| |  ||||||||| |||||||| |||| || |||| ||||||| |||| |||||    
T  29658900 ttttaaaatgttgtagtaagattaagcatttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggcctttt 29658999  T
Q  414 acaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 484  Q
     ||| |||||||  || | |||   ||||||||||| || ||||| || ||||||||  ||||||||||||    
T  29659000 gcaattgttactggaatgttgtacgaatgtcacagagaatggagtaaaacatgtggttcaaaactgcacgc 29659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 19468333 - 19468398
Alignment:
Q  210 gttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaa 275  Q
    |||||| ||||||||||||| | |||| |||||||| |||||||||||  ||||||||||||||||    
T  19468333 gttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaa 19468398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 9581335 - 9581193
Alignment:
Q  211 ttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttc 310  Q
    ||||||||| ||||||||| | |||| ||||| || || ||||||||  ||||||||||| ||    |||||| | |||||||||||  |||||||| ||    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtc 9581236  T
Q  311 acattttaagaagatgtcataacattagacatttgaacttatc 353  Q
    |  |||||| |||||||  | | ||||||||||||||| ||||    
T  9581235 aagttttaaaaagatgttgtcagattagacatttgaacatatc 9581193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 481
Target Start/End: Original strand, 29718953 - 29719094
Alignment:
Q  340 catttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgata 439  Q
    ||||||||||| || ||||| |  ||||||||| || ||||| |||| || |||| ||||||| |||| ||||| ||| |||||||  || | |||   |    
T  29718953 catttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaagttgtatga 29719052  T
Q  440 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 481  Q
    |||||||||| || |||||||| ||||||||  |||||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgca 29719094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 353
Target Start/End: Complemental strand, 9586904 - 9586761
Alignment:
Q  210 gttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattttt 309  Q
    |||||||||| ||||||||| | |||| ||||| || || ||||||||  ||||||||||| ||    |||||| | |||||||||||  |||||||| |    
T  9586904 gttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgt 9586805  T
Q  310 cacattttaagaagatgtcataacattagacatttgaacttatc 353  Q
    ||  |||||  |||||||  | | ||||||||||||||| ||||    
T  9586804 caagttttacaaagatgttgtcagattagacatttgaacatatc 9586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 343 - 484
Target Start/End: Original strand, 41901568 - 41901709
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||  || ||| |||| |||  ||| || |||    
T  41901568 ttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgtaatgatg 41901667  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 484  Q
    ||||| | ||||||||||||||||||||||||||||| ||||    
T  41901668 tcacaaagaagggagtgaagcatgtggtagaaaactgtacgc 41901709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 503
Target Start/End: Complemental strand, 32267520 - 32267381
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||||||   ||| || || ||||| | |||||||||||||    
T  32267520 gttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagc 32267421  T
Q  464 atgtggtagaaaactgcacgctactcaaagagattaattt 503  Q
    |||| |||||||||||||||| ||| | | ||||||||||    
T  32267420 atgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 473
Target Start/End: Original strand, 41889587 - 41889717
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    ||||||||||| |||||||  |||||||||||| |||| |||| |||||||||||||||| | || ||||   || |||||||||||   ||| || |||    
T  41889587 ttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatg 41889686  T
Q  443 tcacagaaaagggagtgaagcatgtggtaga 473  Q
    ||||| | ||||||||||| |||||||||||    
T  41889687 tcacaaagaagggagtgaatcatgtggtaga 41889717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 41901376 - 41901512
Alignment:
Q  217 gatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattt 316  Q
    |||||| |||||| | |||| |||||||| || ||||||||  |||||||||||||||  ||||| | |  ||||| | ||||||||||| ||||  |||    
T  41901376 gatgaagacatcacaatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttt 41901475  T
Q  317 taagaagatgtcataacattagacatttgaacttatc 353  Q
    |||| |  |||  ||||||||||||||||||||||||    
T  41901476 taaggatgtgttgtaacattagacatttgaacttatc 41901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 32267712 - 32267597
Alignment:
Q  238 gcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacatta 337  Q
    |||||||||||  |||||||  |||||||||||||||  ||||| | |  ||||||| ||||||||||  ||||  ||||||| | ||||  ||||||||    
T  32267712 gcttccatcttctccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacatta 32267613  T
Q  338 gacatttgaacttatc 353  Q
    ||||||||||||||||    
T  32267612 gacatttgaacttatc 32267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 17205568 - 17205527
Alignment:
Q  440 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 481  Q
    ||||||||||||| ||| |||| |||||||||||||||||||    
T  17205568 atgtcacagaaaaaggattgaaacatgtggtagaaaactgca 17205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 482
Target Start/End: Complemental strand, 27922574 - 27922435
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||| ||   ||| || ||     
T  27922574 ttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatt 27922475  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||| | ||||||||||| ||||||||||||||||||||    
T  27922474 tcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 482
Target Start/End: Original strand, 18315306 - 18315445
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||  ||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| |  || | |||  | |||    
T  18315306 ttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgttattggaacgctgttgtgatg 18315405  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||||| || ||||  ||| |||||||||||||||||||    
T  18315406 tcacagagaaaggagaaaagtatgtggtagaaaactgcac 18315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 32151345 - 32151287
Alignment:
Q  365 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 423  Q
    ||||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||    
T  32151345 ttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 350
Target Start/End: Original strand, 34936027 - 34936134
Alignment:
Q  243 catctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacat 342  Q
    |||||||||||||||  | |||||||||||||   |||||  || |||||||||  ||||||||| |||  ||||||| ||||||  | |||||||||||    
T  34936027 catctttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacat 34936126  T
Q  343 ttgaactt 350  Q
    ||| ||||    
T  34936127 ttgtactt 34936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 482
Target Start/End: Original strand, 17636455 - 17636572
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    ||||| ||||||||| | ||| |||||||||||||||||  | ||||||| ||| ||| |||| ||   |||| ||||||||| || || ||||||| ||    
T  17636455 gttgacgatgaagcattgtatgtgatctcaaagagttgtcttagacttttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggc 17636553  T
Q  464 atgtggtagaaaactgcac 482  Q
    ||||| ||||||| |||||    
T  17636554 atgtgctagaaaattgcac 17636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 482
Target Start/End: Original strand, 28246360 - 28246465
Alignment:
Q  377 cactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 476  Q
    ||||||||  |||||||||||||||| | || ||||| ||||||| |||||||   |||||   ||||||||| ||  |||||| ||||||||| |||||    
T  28246360 cactctattggatctcaaagagttgtagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaa 28246459  T
Q  477 ctgcac 482  Q
     |||||    
T  28246460 atgcac 28246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 503
Target Start/End: Original strand, 51113835 - 51113974
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    |||||||||||| |||||||| ||||||| ||||||||| |||| ||||| ||||||||||| |||   ||| |  |||||||||| |||||||||||||    
T  51113835 gttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagc 51113934  T
Q  464 atgtggtagaaaactgcacgctactcaaagagattaattt 503  Q
    ||||||||||||| |||||   ||| | ||||||||||||    
T  51113935 atgtggtagaaaaatgcacaaaactaagagagattaattt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 343 - 482
Target Start/End: Original strand, 13470765 - 13470904
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||  ||| ||||| || ||||||||||||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||    
T  13470765 ttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatg 13470864  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    |||||||| |||||||||| ||||||||||| ||||||||    
T  13470865 tcacagaagagggagtgaaacatgtggtagagaactgcac 13470904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 482
Target Start/End: Original strand, 51120926 - 51121065
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||| ||||||| ||||||||||||  ||| ||| | ||||||||||||||| |||| ||||| ||| |||  ||  || | |||    |||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 51121025  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||| |||| |||||||| ||||||||||||||||||||    
T  51121026 tcacacaaaaaggagtgaaacatgtggtagaaaactgcac 51121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 482
Target Start/End: Original strand, 51764494 - 51764612
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    ||||||||| || ||||||||  ||||||||||| |||| | || ||||| ||||| |||||  ||   |||||||||||||  || ||||||||||| |    
T  51764494 gttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaac 51764593  T
Q  464 atgtggtagaaaactgcac 482  Q
    ||||||| |||||||||||    
T  51764594 atgtggttgaaaactgcac 51764612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 1657472 - 1657378
Alignment:
Q  253 aatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaa 347  Q
    |||||| |||| ||||||||||   ||||| | ||||||||| ||||||||||| ||||  ||||||  | ||||  ||||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 504
Target Start/End: Original strand, 45245139 - 45245279
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    |||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||||| ||| | |||  |||| || |||||||||| ||||||||||| |    
T  45245139 gttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaac 45245238  T
Q  464 atgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    ||||||||||||| ||||| | ||| | |||||| ||||||    
T  45245239 atgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 1037710 - 1037836
Alignment:
Q  356 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 455  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  1037710 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 1037809  T
Q  456 agtgaagcatgtggtagaaaactgcac 482  Q
     ||||| ||||| || |||||||||||    
T  1037810 tgtgaaacatgtagtcgaaaactgcac 1037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 505
Target Start/End: Complemental strand, 9411421 - 9411259
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || |||||| |||||   ||||||  |||||||  ||||||||||| |||| |||||||||| |||||||||||  || | ||| ||||||    
T  9411421 ttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatg 9411322  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgc 505  Q
    ||| ||| |||||||||| ||||||||||| ||| |||  || |||||||||||| |||||||    
T  9411321 tcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgc 9411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 475
Target Start/End: Original strand, 6585270 - 6585402
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||  |||||||||||| |||||||| |||||||||||||||||  ||  |||||  |||| ||||| ||||| ||||| ||||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaa 475  Q
    ||||||| |||||| |||| |||||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaa 6585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 348
Target Start/End: Complemental strand, 9411681 - 9411482
Alignment:
Q  146 attctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccat 245  Q
    ||||||||||| |||||| |||||| ||| | || ||||||||| |||||| || || ||    |||||||||| |||||||||||  ||| ||||||||    
T  9411681 attctttgatgaattttgctgtaaggccccaattgaagtctctaggtttggttcgcaattg---gttaagagataaaaacatcaaaaggtttgcttccat 9411585  T
Q  246 ctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttg 345  Q
     || ||||||||  |||||||||||||||     || | | |||||||||| ||||||||||| ||  ||||||| ||||||  ||||||||||||||||    
T  9411584 tttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaacattagacatttg 9411485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 364 - 504
Target Start/End: Complemental strand, 6402905 - 6402765
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    |||||||||||| |||||||| |||||||||||| |||| |||| |||||  |||| ||| | | ||  ||| ||||||||||||||||||||| ||| |    
T  6402905 gttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaac 6402806  T
Q  464 atgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    ||||| |||||||||| || | ||| | ||||||| |||||    
T  6402805 atgtgatagaaaactgtacacaactgagagagatttatttg 6402765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 356 - 503
Target Start/End: Original strand, 7994228 - 7994375
Alignment:
Q  356 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 455  Q
    ||||||| ||| |||| ||| |||| ||| |||||||||||| ||||  ||||||||| ||||| |||||| ||   ||| || |||| || ||  ||||    
T  7994228 atacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggaggg 7994327  T
Q  456 agtgaagcatgtggtagaaaactgcacgctactcaaagagattaattt 503  Q
    |||||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  7994328 agtgaaacatgtggtagaaaactgcacgcaactgaaagagatttattt 7994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 504
Target Start/End: Complemental strand, 14820759 - 14820598
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| |||| |||| ||||| | | | |||||| ||  |||| || |||    
T  14820759 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatg 14820660  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    ||||||| ||||| ||||| ||||||||| |||||||||| |  || | |||||||||||||    
T  14820659 tcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 482
Target Start/End: Complemental strand, 6415996 - 6415893
Alignment:
Q  379 ctctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaact 478  Q
    |||||| |||||||||||| |||| | || ||||| ||||| |||||| ||   ||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  6415996 ctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaact 6415897  T
Q  479 gcac 482  Q
    ||||    
T  6415896 gcac 6415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 481
Target Start/End: Complemental strand, 19632501 - 19632367
Alignment:
Q  347 acttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcac 446  Q
    |||| ||||||||||  |||||||||||   ||| | | |||||||||||| |||| |||| ||||| ||||| ||||| |||   |||| |||| ||||    
T  19632501 acttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcac 19632402  T
Q  447 agaaaagggagtgaagcatgtggtagaaaactgca 481  Q
    ||| ||||||||||| || ||||||||||||||||    
T  19632401 agagaagggagtgaaacacgtggtagaaaactgca 19632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 481
Target Start/End: Original strand, 6603248 - 6603373
Alignment:
Q  356 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 455  Q
    ||||| |||||||||||||| || |||||  ||||||||||||||||  ||| |||||  |||| ||| | |||   ||| || |||||||||| || ||    
T  6603248 atacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaagg 6603347  T
Q  456 agtgaagcatgtggtagaaaactgca 481  Q
    |||||| |||||||||||||||||||    
T  6603348 agtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 482
Target Start/End: Original strand, 11936322 - 11936447
Alignment:
Q  357 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 456  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11936322 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11936421  T
Q  457 gtgaagcatgtggtagaaaactgcac 482  Q
    |||| ||||||||| ||||| |||||    
T  11936422 gtgacgcatgtggttgaaaaatgcac 11936447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 482
Target Start/End: Original strand, 11948302 - 11948427
Alignment:
Q  357 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 456  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11948302 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11948401  T
Q  457 gtgaagcatgtggtagaaaactgcac 482  Q
    |||| ||||||||| ||||| |||||    
T  11948402 gtgacgcatgtggttgaaaaatgcac 11948427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 482
Target Start/End: Complemental strand, 14818448 - 14818309
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| ||||  ||| ||||| | | | |||||| ||   ||| ||||||    
T  14818448 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgtaataatg 14818349  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||    
T  14818348 tcacagagaagggtgtgaaacatgtagtagaaaactgcac 14818309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 482
Target Start/End: Complemental strand, 6432227 - 6432088
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||| |||||||||||| |||| ||| |||||| ||||| |||| |||| ||| | ||||| || ||  |    ||||||||||    
T  6432227 ttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatg 6432128  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||| | ||||||||||| | |||||||||||| |||||    
T  6432127 tcacacagaagggagtgaaacttgtggtagaaaaatgcac 6432088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 482
Target Start/End: Complemental strand, 7119202 - 7119084
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| |||| | |||||| |    
T  7119202 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaaaaaagaagtgaaac 7119103  T
Q  464 atgtggtagaaaactgcac 482  Q
    |||||| ||||||||||||    
T  7119102 atgtggaagaaaactgcac 7119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 6394834 - 6394769
Alignment:
Q  439 aatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    ||||||||||||||||| ||| | |||||||||||||||||||| | | | | |||||||||||||    
T  6394834 aatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 7119397 - 7119284
Alignment:
Q  235 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 334  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7119397 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7119301  T
Q  335 ttagacatttgaactta 351  Q
    ||| |||||||||||||    
T  7119300 ttaaacatttgaactta 7119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 482
Target Start/End: Complemental strand, 7131680 - 7131562
Alignment:
Q  364 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 463  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| | || | |||||| |    
T  7131680 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaacaaagcagtgaaac 7131581  T
Q  464 atgtggtagaaaactgcac 482  Q
    |||||| ||||||||||||    
T  7131580 atgtggaagaaaactgcac 7131562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 7131875 - 7131762
Alignment:
Q  235 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 334  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7131875 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7131779  T
Q  335 ttagacatttgaactta 351  Q
    ||| |||||||||||||    
T  7131778 ttaaacatttgaactta 7131762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 19632733 - 19632615
Alignment:
Q  178 ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaa 277  Q
    ||||||||||| | ||||||||  | ||||| |||||| |||||||| || | | |||| |||||  | |||||||||||  ||| ||||||||||||      
T  19632733 ttaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgtagcggcttgatttgaatc 19632634  T
Q  278 attgctatgacatatctaa 296  Q
     ||||||| ||||||||||    
T  19632633 gttgctattacatatctaa 19632615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 9411752 - 9411716
Alignment:
Q  75 gaactatccttcacttagtgagattaaactggaatac 111  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  9411752 gaactatcctttacttagtgagattaaaatggaatac 9411716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 10579593 - 10579708
Alignment:
Q  233 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 332  Q
    ||||||||||| | || ||||||||  |||||||||||||||| | |||| |  ||||||||   ||||||||||||||  ||| | ||||||||  |||    
T  10579593 tgttagcttcctttttccccaatttgcagctgcttgatttgaatacttgcgaatacatatct---gaaggtatttttcaagtttcaggaagatgtggtaa 10579689  T
Q  333 cattagacatttgaactta 351  Q
     ||||  ||||||||||||    
T  10579690 gattaagcatttgaactta 10579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 482
Target Start/End: Complemental strand, 546954 - 546840
Alignment:
Q  368 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 467  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||  || |||||||  ||| ||||  | |||||||||| ||||||||||| |||||    
T  546954 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgt 546855  T
Q  468 ggtagaaaactgcac 482  Q
    | |||||||||||||    
T  546854 gctagaaaactgcac 546840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 55908774 - 55908900
Alignment:
Q  356 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 455  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  55908774 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 55908873  T
Q  456 agtgaagcatgtggtagaaaactgcac 482  Q
     ||||| ||||| || |||||||||||    
T  55908874 tgtgaaacatgtagtcgaaaactgcac 55908900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 1524533 - 1524599
Alignment:
Q  357 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 423  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  1524533 tacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 504
Target Start/End: Original strand, 1548457 - 1548618
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  |||||||| ||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||  ||||||  ||| | ||| | |||     
T  1548457 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 1548556  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    ||||||| ||||||||||| ||| | | |||||||||| ||| ||| | ||| |||||||||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttg 1548618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 527
Target Start/End: Original strand, 1513440 - 1513621
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || | ||||| ||||||||||||| |||||||  | ||||||||| ||||| |||| ||||| |||||  |||| ||||| ||   || ||    
T  1513440 ttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaaggttg---tattg 1513536  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaagtgaatgg 527  Q
    ||||||| | ||||||||||| |||| ||||||| ||||| | ||| | |||||| |||||| |  |||||  ||||||||||||    
T  1513537 tcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatgg 1513621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 522
Target Start/End: Original strand, 8184063 - 8184242
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||| |||||||||  ||||||||||   ||||||||||||||| |||| |||||  ||||||||||  ||   ||||| ||||    
T  8184063 ttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattgtga-aatg 8184161  T
Q  443 -tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaagtg 522  Q
     |||||||  ||||||||||||||||| ||||||| ||||| | ||| |||| ||| ||||||  ||| |||| |||||||    
T  8184162 atcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttgaggaactgtgataaagtg 8184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 481
Target Start/End: Complemental strand, 640981 - 640843
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| ||  ||||||  |||||||||||| |||||||  ||| |||||||| |||  |||| ||||| || ||||||||  |||  ||| || |||    
T  640981 ttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcattatg 640882  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgca 481  Q
    | ||| | ||||||||||| |||||||||||||||||||    
T  640881 taacaaagaagggagtgaatcatgtggtagaaaactgca 640843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 484
Target Start/End: Complemental strand, 7307926 - 7307785
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || ||||||   |||||||||||||||||   ||||||||||||||||||| || | ||||| || ||||||||  |||| |||  || ||    
T  7307926 ttgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttgcacctgttactggaaggttgttttattg 7307827  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 484  Q
    ||||    |  ||| |||||||||||||||||||||||||||    
T  7307826 tcacgatgactggattgaagcatgtggtagaaaactgcacgc 7307785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 351
Target Start/End: Complemental strand, 1600664 - 1600546
Alignment:
Q  233 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 332  Q
    |||| |||||||  |||||||||||  | |||||||||||||  | ||||  | |||||||| |||||||||||| |||  ||||||| |||| |  |||    
T  1600664 tgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaa 1600565  T
Q  333 cattagacatttgaactta 351  Q
     ||||||||||||||||||    
T  1600564 aattagacatttgaactta 1600546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 482
Target Start/End: Complemental strand, 558542 - 558425
Alignment:
Q  365 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagca 464  Q
    ||||||||||||||||| || ||||||||||||||||| |||| |||||  ||||||  ||| ||   |||  |   || ||||| || |||||||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgtatcttcaattttgtatttgcgttacagataaaggagtgaagca 558443  T
Q  465 tgtggtagaaaactgcac 482  Q
    |||| |||||||||||||    
T  558442 tgtgctagaaaactgcac 558425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 8186930 - 8187019
Alignment:
Q  218 atgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattt 307  Q
    |||||||| || || ||||| ||||| | || ||||||||  || ||||||||||||   ||||||||||||||||| ||||||||||||    
T  8186930 atgaaaacctcgaaatgttatcttccttattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtattt 8187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 53761892 - 53761941
Alignment:
Q  433 tgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    |||||||||||||| || ||||||||||| ||||||| ||||||||||||    
T  53761892 tgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcac 53761941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 476
Target Start/End: Original strand, 1489455 - 1489527
Alignment:
Q  404 gtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 476  Q
    |||| ||||| ||||| |||||  |||| |||  |||||||||||| |||||||||||||||||| |||||||    
T  1489455 gtgggcttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaa 1489527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 553545 - 553466
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtt 422  Q
    |||||||| || | |||||| |||||||||||||||||  || |||| ||||||||||||  ||| ||||| ||||||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgtt 553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 570417 - 570334
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactt 426  Q
    |||||||| || |||||| | |||||| | |||| ||||||| |||| |||||||||||| | || ||||| ||||||||||||    
T  570417 ttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttactt 570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 482
Target Start/End: Original strand, 12121490 - 12121629
Alignment:
Q  343 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 442  Q
    |||||||| || ||||||| ||||||||||||| ||||||   | ||||||||| ||||  |||| ||||| ||||| | |||  || | ||   |  ||    
T  12121490 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttg 12121589  T
Q  443 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    ||||||| | |||||||||||||||||||||||| |||||    
T  12121590 tcacagagatgggagtgaagcatgtggtagaaaaatgcac 12121629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 482
Target Start/End: Complemental strand, 553448 - 553406
Alignment:
Q  440 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 482  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcac 553406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 1524613 - 1524677
Alignment:
Q  440 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 504  Q
    |||||||||| | |||||||||  ||||| ||||||||||||| | ||| | |||||||||||||    
T  1524613 atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttg 1524677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 670 - 796
Alignment:
Q  356 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 455  Q
    |||||||||| ||||||||| |||||||||||||||| |||| |||| |||| || ||||||||||||||  ||   |||||| | |||| ||| || ||    
T  670 atacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaaattgtgatgaagtcatagagaatgg 769  T
Q  456 agtgaagcatgtggtagaaaactgcac 482  Q
     ||||| ||||| ||||||||||||||    
T  770 tgtgaaacatgtagtagaaaactgcac 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 505
Target Start/End: Original strand, 15092209 - 15092346
Alignment:
Q  368 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 467  Q
    ||||| || ||||||||  ||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||||||||||  ||||||||| |||||    
T  15092209 atgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgt 15092308  T
Q  468 ggtagaaaactgcacgctactcaaagagattaatttgc 505  Q
    | ||||||||||||| | | | | ||||||||||||||    
T  15092309 gctagaaaactgcacacaattgagagagattaatttgc 15092346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 481
Target Start/End: Complemental strand, 10614634 - 10614521
Alignment:
Q  368 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 467  Q
    ||||| || |||||||| ||||||| ||||  ||| |||| ||||| ||||| |||||| ||   | | |||||||||||||| | |||||||| |||||    
T  10614634 atgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgtcacagaagaaggagtgaaacatgt 10614535  T
Q  468 ggtagaaaactgca 481  Q
    ||||||||||||||    
T  10614534 ggtagaaaactgca 10614521  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 88999 - 88943
Alignment:
Q  295 aaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaactta 351  Q
    ||||||||||||  ||| |||||||| ||||||  ||| ||||||||||||||||||    
T  88999 aaagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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