View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15340_low_1 (Length: 641)
Name: NF15340_low_1
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15340_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 8724786 - 8724163
Alignment:
| Q |
1 |
tcggtatttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaatttggatgataatcaacattttataatgtctcatatcagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8724786 |
tcggtatttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaatttggatgataatcaacattttataatgtctcatatcagatt |
8724687 |
T |
|
| Q |
101 |
tgaacttgtactccgaggttacaaagtcaatcttttatcatgcatctcatgaacccgttaacatttactttatacaattcatacaaataaataagaagag |
200 |
Q |
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| T |
8724686 |
tgaacttgtactccgaggttacaaagtcaatcttttatcatgcatctcatgaacccgttaacatttactttatacaattcatacaaataaataacaagag |
8724587 |
T |
|
| Q |
201 |
gtccaaattaaatgaagccaatgcttcaaaatatgatattgtttcatgaacttcacagcnnnnnnnnnnnnnngtggcttggtatgatgatcaagaaaaa |
300 |
Q |
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| T |
8724586 |
gtccaaat-----gaagccaatgcttcaaaatatgaaattgtttcatgaacttcacagcaaaaactaaaaaaagtggcttggtatgatgatcaagaaaaa |
8724492 |
T |
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| Q |
301 |
tagtatttcaacaaaatcttcaactcagagttacttacatcgcatagcagaaaaagacaatgatggatctttccataaaacaaaaccgatttaagaaacc |
400 |
Q |
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| T |
8724491 |
tagtatttcaacaaaatcttcaactcagagttacttacatcgcatagcagaaaaagacaatgatggatctttccataaaacaaaactgatttaagaaacc |
8724392 |
T |
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| Q |
401 |
aatagaatatgtattggaaggtattacttcatctagtaaacaaccaagatttccagtcatagataatagaataaagttagttacaccaaaataagctagt |
500 |
Q |
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| T |
8724391 |
aatagaatatatattggaaggtattacttcatctagtaaacaaccaagattaccagtcatagataatagaatagagttagttacaccaaaataagctagt |
8724292 |
T |
|
| Q |
501 |
tcaaagttagttataattggttacttgtgatccaagtcacctagctcttttcacttatatatttatgaatcttgaaactaactttcagtttagatcattc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8724291 |
tcaaagttagttataattggttacttgtgatccaagtcacctagctcttttcacttatatatttatgaatcttgaaactaactttcagtttagatcattc |
8724192 |
T |
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| Q |
601 |
attccaatatctgagatttctttgttcat |
629 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8724191 |
attccaatatctgagatttctttgttcat |
8724163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 8744624 - 8744548
Alignment:
| Q |
4 |
gtatttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaatttggatgataatcaacatttt |
80 |
Q |
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| T |
8744624 |
gtatttttctcagctttcttcatcaagcgacataaaacaaaagtcctctacaaaatttggacaataatcaacatttt |
8744548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 14371953 - 14372024
Alignment:
| Q |
9 |
tttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaattt-ggatgataatcaacattt |
79 |
Q |
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| T |
14371953 |
tttctcagctttcttcatcaagcgacataaaacaaaagtcctctacaaaatttcggatgataatcagcattt |
14372024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 8691339 - 8691265
Alignment:
| Q |
7 |
tttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaa-tttggatgataatcaacatttt |
80 |
Q |
| |
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| T |
8691339 |
tttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttggaggataatcaacatttt |
8691265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 8706002 - 8705948
Alignment:
| Q |
7 |
tttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaattt |
61 |
Q |
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| T |
8706002 |
tttttctcagctttcttcatcaagcgacataaaacaaaagtcctctacaaaattt |
8705948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 22467542 - 22467501
Alignment:
| Q |
475 |
agttagttacaccaaaataagctagttcaaagttagttataa |
516 |
Q |
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| T |
22467542 |
agttagttacaccaaaataagcttgttcaaagttagttataa |
22467501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 8723315 - 8723276
Alignment:
| Q |
22 |
ttcatcaggcgacataaaacaaaagtcctctacaaaattt |
61 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
8723315 |
ttcatcaagcgacataaaacaaaagtcctctacaaaattt |
8723276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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