View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15340_low_4 (Length: 354)

Name: NF15340_low_4
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15340_low_4
NF15340_low_4
[»] chr3 (10 HSPs)
chr3 (1-346)||(27633775-27634120)
chr3 (1-346)||(34518593-34518938)
chr3 (35-120)||(34371084-34371169)
chr3 (31-120)||(34527920-34528006)
chr3 (258-322)||(34527592-34527656)
chr3 (22-72)||(34489955-34490005)
chr3 (151-242)||(34527707-34527799)
chr3 (22-82)||(27630788-27630848)
chr3 (32-80)||(34473116-34473165)
chr3 (22-71)||(34523419-34523467)
[»] chr6 (3 HSPs)
chr6 (33-117)||(24486401-24486485)
chr6 (33-117)||(24472440-24472524)
chr6 (33-117)||(24468133-24468217)
[»] scaffold1215 (1 HSPs)
scaffold1215 (49-120)||(2109-2180)
[»] chr2 (2 HSPs)
chr2 (49-120)||(10528021-10528092)
chr2 (49-120)||(10534921-10534992)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 27634120 - 27633775
Alignment:
Q  1 ttttctgtcttttacaagaaaaggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatctt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27634120 ttttcagtcttttacaagaaaaggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatctt 27634021  T
Q  101 caacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 200  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27634020 caacaacacctactgaggtgtcacaagatattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 27633921  T
Q  201 ttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttcttcttggatgtattttatagaata 300  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27633920 ttttttatatttgattttaataatatttatgaatgtgtgtgattactatgttctgtatgatatatcaattttgttcttcttggatgtattttatagaata 27633821  T
Q  301 gattgattatatgtcaagtcttcaatttaccttagcgatgatgtcc 346  Q
    |||||||||||||||||||||||||||||||||||  |||||||||    
T  27633820 gattgattatatgtcaagtcttcaatttaccttagaaatgatgtcc 27633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 34518938 - 34518593
Alignment:
Q  1 ttttctgtcttttacaagaaaaggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatctt 100  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34518938 ttttcagtcttttagaagaaaaggttgcatgagagagtgattgttgagtgagtgacaatgacgaactgcacagaggacaacaacattggagcttcatctt 34518839  T
Q  101 caacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 200  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  34518838 caacaacacctactgaggtgtcacaagatattcctgtttttgatattcgcatgatgaataaagttgacgatcacagtatttcggtggatgagaaaggttg 34518739  T
Q  201 ttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttcttcttggatgtattttatagaata 300  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34518738 ttttttatatttgattttaataatatttatgcatgtgtgtgattactatgttctgtatgatatatcaattttgttcttcttggatgtattttatagaata 34518639  T
Q  301 gattgattatatgtcaagtcttcaatttaccttagcgatgatgtcc 346  Q
    |||||||||||||||||||||||||||||||||||  |||||||||    
T  34518638 gattgattatatgtcaagtcttcaatttaccttagaaatgatgtcc 34518593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 34371084 - 34371169
Alignment:
Q  35 gagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 120  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||  |||||||||| |||||| |||| |||||||||    
T  34371084 gagtgattgttgagtgagtgacaatgacaaactgcacagaggaaaataacatgagagcttcatcatcaacagcaccaactgaggtg 34371169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 34528006 - 34527920
Alignment:
Q  31 gagagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 120  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  34528006 gagagagagattgtcgagtgagtgacaatgacgaattgcacagaggaaaacaac--ttgag-ttcatcttcaacaacacctactgaggtg 34527920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 34527656 - 34527592
Alignment:
Q  258 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 322  Q
    ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  34527656 tgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtctt 34527592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 34490005 - 34489955
Alignment:
Q  22 aggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcaca 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34490005 aggttgcgtgagagagtgattgttgagtgagtgacaatgacgaattgcaca 34489955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 34527799 - 34527707
Alignment:
Q  151 atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttgttttgtat-atttgattttaataatatttatgtatgtgtgtga 242  Q
    |||| |||||||||||| |||||||||||||| |  |||||||||||||||||| | | |||||||||||||||| ||| | |||||||||||    
T  34527799 atgacgaatgaggttgatgatcacagtatttctggagatgagaaaggttgttttttttaatttgattttaataatctttctttatgtgtgtga 34527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 27630848 - 27630788
Alignment:
Q  22 aggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaaca 82  Q
    ||||||||||  |||||||||||||||||||||||||||| ||| |||||| | |||||||    
T  27630848 aggttgcgtgccagagtgattgttgagtgagtgacaatgaagaattgcacataagaaaaca 27630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 34473165 - 34473116
Alignment:
Q  32 agagagtgattgtt-gagtgagtgacaatgacgaactgcacagaggaaaa 80  Q
    |||||||||||||| || ||||||||||||||||| |||||| |||||||    
T  34473165 agagagtgattgtttgactgagtgacaatgacgaattgcacataggaaaa 34473116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 34523467 - 34523419
Alignment:
Q  22 aggttgcgtgagagagtgattgttgagtgagtgacaatgacgaactgcac 71  Q
    |||||||||||| |||||||||||| ||||||||||||| |||| |||||    
T  34523467 aggttgcgtgag-gagtgattgttgtgtgagtgacaatggcgaattgcac 34523419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 24486401 - 24486485
Alignment:
Q  33 gagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgag 117  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||||||| |  | ||||  |||||||||||||||||||||    
T  24486401 gagagtgattgttgagcgagtgacaatgaagaactgcatagaggaaaacaacgtgagcgctttgtcttcaacaacacctactgag 24486485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 24472440 - 24472524
Alignment:
Q  33 gagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgag 117  Q
    |||||||||||||| | || ||||||||| ||| |||||||||||||||||| |  | ||||  |||||||||||||||||||||    
T  24472440 gagagtgattgttgtgcgactgacaatgatgaattgcacagaggaaaacaacgtgagcgctttgtcttcaacaacacctactgag 24472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 24468133 - 24468217
Alignment:
Q  33 gagagtgattgttgagtgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgag 117  Q
    |||||||||||||||| |||| | ||||| ||||| ||||||||||||||||    | |||||||||| |||||||| |||||||    
T  24468133 gagagtgattgttgagcgagttaaaatgaagaactacacagaggaaaacaacgagagcgcttcatcttaaacaacacttactgag 24468217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 2180 - 2109
Alignment:
Q  49 tgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 120  Q
    ||||||||||||||||||| ||||||||||||||||||  |  |||||||| || |||||||||||||||||    
T  2180 tgagtgacaatgacgaactacacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtg 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 10528092 - 10528021
Alignment:
Q  49 tgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 120  Q
    ||||||||||||||||||| ||||||||||||||||||  |  |||||||| || |||||||||||||||||    
T  10528092 tgagtgacaatgacgaactacacagaggaaaacaacatgcgcacttcatctccagcaacacctactgaggtg 10528021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 10534992 - 10534921
Alignment:
Q  49 tgagtgacaatgacgaactgcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg 120  Q
    ||||||||||||||||||| ||||||||||||||||||  |  |||||||| || |||||||||||||||||    
T  10534992 tgagtgacaatgacgaactacacagaggaaaacaacatgagctcttcatctccaccaacacctactgaggtg 10534921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University