View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15340_low_5 (Length: 301)

Name: NF15340_low_5
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15340_low_5
NF15340_low_5
[»] chr3 (5 HSPs)
chr3 (19-286)||(8120357-8120626)
chr3 (19-279)||(16293445-16293709)
chr3 (234-286)||(50540642-50540694)
chr3 (241-286)||(16279606-16279651)
chr3 (23-104)||(21543925-21544006)
[»] chr2 (4 HSPs)
chr2 (22-276)||(25194864-25195122)
chr2 (19-278)||(25850379-25850641)
chr2 (212-285)||(18815372-18815445)
chr2 (23-146)||(30938699-30938824)
[»] chr4 (5 HSPs)
chr4 (19-279)||(19642499-19642749)
chr4 (19-146)||(25658927-25659056)
chr4 (175-276)||(43609762-43609863)
chr4 (240-279)||(1790340-1790379)
chr4 (168-252)||(25658819-25658903)
[»] chr8 (3 HSPs)
chr8 (19-161)||(14984913-14985059)
chr8 (28-286)||(17342008-17342267)
chr8 (172-286)||(17318598-17318712)
[»] chr5 (1 HSPs)
chr5 (19-166)||(17217838-17217988)
[»] chr6 (1 HSPs)
chr6 (26-146)||(11704900-11705020)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 8120357 - 8120626
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaa--tactgtgtttcgtggt 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||  || |||||||||||||    
T  8120357 atattccgctttcaagaagacgattaaggttttcttaactacgacggactctttggatgatttgaagacacaactgaaaaaaaatattgtgtttcgtggt 8120456  T
Q  117 gaatatcatagtacatcttatgtatttgtaacaaccgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaagctt 216  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| |||||||    
T  8120457 gaagatcatagtacatcttatgtatttgtaacaaccgcattatgatcttgaggcggacaaagacgaagacatgttgaaaacgatttattatcctaagctt 8120556  T
Q  217 attgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttacatatctgtg 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8120557 attgaggacgatagtcttgtagaatttatgtttaggaggatgattgaaaataatgtgttacatctctgtg 8120626  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 16293445 - 16293709
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatactgtg--tttcgtggt 116  Q
    ||||||||||| ||||||||||||||| | |||| ||||| |||| ||| || ||||||| || || |||||||| |  ||||||| ||  | || ||||    
T  16293445 atattccgcttccaagaaaacgattaaaggtttcctaactccgaccgacactatggatgacttaaagacacaacttag-aaatactttgagtatcatggt 16293543  T
Q  117 gaatatcatagtacatcttatgtatttgtaaca--accgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaagc 214  Q
    ||| |||||| ||||||| |||||||||||  |  ||||  |   || |||| |||| |||||||||||||||||||||||||  ||||||||| |  |     
T  16293544 gaagatcatactacatctcatgtatttgtacaagtaccgtgtgtagaccttggggcgaacaaagacgaagacatgtggaaaactatttattatcctcggg 16293643  T
Q  215 -ttattgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttacat 279  Q
     ||||| | ||||||||   | ||||||||||||||||||||||  ||||||||||||||||||||    
T  16293644 gttattcatgacgatagcgacatagaatttatgtttaggaggatctttgaaaataatgtgttacat 16293709  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 50540642 - 50540694
Alignment:
Q  234 cgtagaatttatgtttaggaggatgattgaaaataatgtgttacatatctgtg 286  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  50540642 cgtaggatttatgtttaggaggatggttgaaaataatgtgttacatctctgtg 50540694  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 16279606 - 16279651
Alignment:
Q  241 tttatgtttaggaggatgattgaaaataatgtgttacatatctgtg 286  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  16279606 tttatgtttaggaggatggatgaaaataatgtgttacatatgtgtg 16279651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 21543925 - 21544006
Alignment:
Q  23 tccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatact 104  Q
    |||||||||||||| |||||||||||||| ||||||  ||| |||    ||||||| ||||| |||||||| ||||||||||    
T  21543925 tccgctttcaagaagacgattaaggtttttttaactctgaccgacatgatggatgagttgaagacacaacttaacaaatact 21544006  T

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Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 25195122 - 25194864
Alignment:
Q  22 ttccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatact--gtgtttcgtggtgaa 119  Q
    ||||||||||||||| | ||||||||||||||||||| |||||| | |||| ||| | |||||||||||||||||||||||||  |||||||||||||||    
T  25195122 ttccgctttcaagaagaggattaaggttttcttaacttcgacaggcacttttgataacttgaatacacaactgaacaaatactttgtgtttcgtggtgaa 25195023  T
Q  120 tatcatagtacatcttatgtatttgtaa--caaccgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaagctta 217  Q
     |||||||||||||| ||||||||||||  |||||| |||||||||||| | | |||||||| |||||||| |||||||   ||||||||| ||||||||    
T  25195022 gatcatagtacatctcatgtatttgtaaaacaaccggattatgatcttgggacagacaaagaggaagacatttggaaaatgatttattatcctaagctta 25194923  T
Q  218 ttgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgtta 276  Q
    ||||||||||||||  ||||| |||||||||||||||| |  |||||||||||||||||    
T  25194922 ttgaggacgatagtgacgtaggatttatgtttaggaggtttgttgaaaataatgtgtta 25194864  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 25850641 - 25850379
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaata--ctgtgtttcgtggt 116  Q
    |||||| ||||||||||| |||||||| |||||||||||| |||| ||| |||||||| | ||||| |||||||| ||||||||   |||||||  ||||    
T  25850641 atattctgctttcaagaagacgattaaagttttcttaactccgaccgacactttggattacttgaagacacaacttaacaaatattttgtgttttatggt 25850542  T
Q  117 gaatatcatagtacatcttatgtatttgtaaca---accgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaag 213  Q
    ||| |||||||||||||| |||||||||| |||   | ||  |   ||||||  |||||||||||||||||||||||| ||||  |||||||||||| ||    
T  25850541 gaagatcatagtacatctcatgtatttgt-acaggtatcgtgtgtagatcttagggcggacaaagacgaagacatgtgaaaaatggtttattatcttcag 25850443  T
Q  214 cttattgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttaca 278  Q
     |||||   |||||||    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  25850442 gttattcgtgacgataacgacgtaggatttatgtttaggaggatgattg-aaataatgtgttaca 25850379  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 18815372 - 18815445
Alignment:
Q  212 agcttattgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttacatatctgt 285  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| |  |||||||||||||||||||| |||||    
T  18815372 agcttattgaggacgatagtgacgtaggatttatgtttaggaggttagttgaaaataatgtgttacatctctgt 18815445  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 30938699 - 30938824
Alignment:
Q  23 tccgctttcaagaaaacgattaaggttttctt--aactacgacagactctttggatgatttgaatacacaactgaacaaatactgtgtttcgtggtgaat 120  Q
    |||||||||||||| |||||||| ||||| ||  |||| |||| ||| |  ||||||| ||||| | |||||| |||||||| | |   || ||||||||    
T  30938699 tccgctttcaagaagacgattaaagtttttttttaactccgaccgacacaatggatgagttgaagaaacaacttaacaaatattatccatcttggtgaat 30938798  T
Q  121 atcatagtacatcttatgtatttgta 146  Q
    |||||| ||||||| |||||||||||    
T  30938799 atcatactacatctcatgtatttgta 30938824  T

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Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 19642499 - 19642749
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatactgtgtttcgtggtga 118  Q
    ||||| |||||||||| | | ||||||||||||||||||| || | ||  |||| ||||| ||||| |||||||||||||||||||||||||||||||||    
T  19642499 atatttcgctttcaaggagatgattaaggttttcttaacttcggcggatactttagatgacttgaagacacaactgaacaaatactgtgtttcgtggtga 19642598  T
Q  119 atatcatagtacatcttatgtatttgtaacaaccgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaagcttat 218  Q
    | ||||||| |||||| ||||||||         ||||||| |||||| |||| |||| || ||||||||||  ||||  |||||||||| |||||||||    
T  19642599 agatcatagcacatctcatgtattt---------gcattataatcttggggcgtacaatgatgaagacatgt-aaaaatggtttattatcctaagcttat 19642688  T
Q  219 tgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttacat 279  Q
    ||||||||||| |  | ||| |||||| |||||||||||| ||||||||||||||||||||    
T  19642689 tgaggacgataatgacataggatttatctttaggaggatggttgaaaataatgtgttacat 19642749  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 25659056 - 25658927
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatactgtg--tttcgtggt 116  Q
    |||||||||||||||||| |||||||| ||||| ||||||   || |||    ||||||| ||||| |||||||| |||||||| | ||  | || ||||    
T  25659056 atattccgctttcaagaagacgattaaagtttttttaactctaaccgacataatggatgagttgaagacacaacttaacaaatattttgcctatcttggt 25658957  T
Q  117 gaatatcatagtacatcttatgtatttgta 146  Q
    ||| |||||| |||||||||||||||||||    
T  25658956 gaaaatcatactacatcttatgtatttgta 25658927  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 43609762 - 43609863
Alignment:
Q  175 aaagacgaagacatgtggaaaacagtttattatcttaagcttattgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgt 274  Q
    ||||| ||||||||||||||||| ||||||| || |  | ||||| | ||||||||   |||||||||||||||| ||  |||  |||||||||||||||    
T  43609762 aaagatgaagacatgtggaaaacggtttattttcctcgggttattcacgacgatagcaacgtagaatttatgtttgggtcgattgttgaaaataatgtgt 43609861  T
Q  275 ta 276  Q
    ||    
T  43609862 ta 43609863  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 1790340 - 1790379
Alignment:
Q  240 atttatgtttaggaggatgattgaaaataatgtgttacat 279  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  1790340 atttatgtttaggagaatgagtgaaaataatgtgttacat 1790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 25658903 - 25658819
Alignment:
Q  168 ggcggacaaagacgaagacatgtggaaaacagtttattatcttaagcttattgaggacgatagtctcgtagaatttatgtttagg 252  Q
    |||||| ||||| |||||| |||| |||||||||||||||| |  | ||||| | || ||||||  |||||||| ||||||||||    
T  25658903 ggcggataaagatgaagacgtgtgaaaaacagtttattatcatctggttattcatgatgatagtgacgtagaatatatgtttagg 25658819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 14985059 - 14984913
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatac--tgtgtttcgtggt 116  Q
    ||||||| |||||||||| | ||||||||||||||||||| |||| ||| |||||||||| ||||| ||| ||||||||||||||  | |||||||| ||    
T  14985059 atattcctctttcaagaagatgattaaggttttcttaactccgacggacactttggatgacttgaagacataactgaacaaatactttttgtttcgtagt 14984960  T
Q  117 gaatatcatagtacatcttatgtatttgt--aacaaccgcattatga 161  Q
    ||| |||| ||||||||| |||||| |||  |||||| |||||||||    
T  14984959 gaagatcaaagtacatctcatgtatatgtacaacaactgcattatga 14984913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 17342008 - 17342267
Alignment:
Q  28 tttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatactgtgtttcgtggtgaatatcatag 127  Q
    ||||||||| |||||||| | ||||||||||  ||| |||  ||| ||||| |||||  ||||||| |||||||| |||||||| ||||||| ||||| |    
T  17342008 tttcaagaagacgattaaagctttcttaactt-gaccgacaatttagatgacttgaaggcacaacttaacaaatattgtgtttcatggtgaagatcattg 17342106  T
Q  128 tacatcttatgtatttgtaaca---accgcattatgatcttgcggcggacaaagacgaagacatgtggaaaacagtttattatcttaagcttattgagga 224  Q
    || |||| |||||||||| |||   ||||  |   ||||||  ||| |||||||||||||||||||| |||||||||||||||| |  | |||||   ||    
T  17342107 taaatctcatgtatttgt-acatgtaccgtgtgtagatcttagggcagacaaagacgaagacatgtgaaaaacagtttattatcgtccggttattcgtga 17342205  T
Q  225 cgatagtctcgtagaatttatgtttaggaggatgattgaaaataatgtgttacatatctgtg 286  Q
    ||||||   ||||  |||||||||||||| ||||  ||||||||||||||||||| ||||||    
T  17342206 cgatagcgacgtaagatttatgtttaggatgatggctgaaaataatgtgttacatctctgtg 17342267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 17318598 - 17318712
Alignment:
Q  172 gacaaagacgaagacatgtggaaaacagtttattatcttaagcttattgaggacgatagtctcgtagaatttatgtttaggaggatgattgaaaataatg 271  Q
    |||||||||||||||||||| |||||| ||||||||| |  | |||||   ||||||||   ||||| |||||||||||||| ||||  ||||||||| |    
T  17318598 gacaaagacgaagacatgtgaaaaacaatttattatcctccggttatttgtgacgatagcgacgtaggatttatgtttaggatgatggctgaaaataacg 17318697  T
Q  272 tgttacatatctgtg 286  Q
    |||||||| ||||||    
T  17318698 tgttacatctctgtg 17318712  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 17217988 - 17217838
Alignment:
Q  19 atattccgctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatac--tgtgtttcgtggt 116  Q
    |||||||||||| ||||| |||||| | |||||||||||| |||| ||  || || ||||  | || |||||||||||||| |||  |||||||||||||    
T  17217988 atattccgctttaaagaagacgatttaagttttcttaactccgacggatactctgaatgacctaaagacacaactgaacaa-taccttgtgtttcgtggt 17217890  T
Q  117 gaatatcatagtacatcttatgtatttgt--aacaaccgcattatgatcttg 166  Q
    ||| |||||||||||||  ||||||||||  |||||||||||||||||||||    
T  17217889 gaagatcatagtacatcgcatgtatttgtacaacaaccgcattatgatcttg 17217838  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 11704900 - 11705020
Alignment:
Q  26 gctttcaagaaaacgattaaggttttcttaactacgacagactctttggatgatttgaatacacaactgaacaaatactgtgtttcgtggtgaatatcat 125  Q
    |||||||||||||| ||||| ||||||||||||  |||  || |  ||||||| ||||| | |||| | |||||||| ||||| || ||||||| |||||    
T  11704900 gctttcaagaaaacaattaaagttttcttaactctgactcacacaatggatgacttgaagatacaaattaacaaatattgtgtatcttggtgaagatcat 11704999  T
Q  126 agtacatcttatgtatttgta 146  Q
    | ||||| | || ||||||||    
T  11705000 actacatatcatatatttgta 11705020  T

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